macs3-project/MACS

Q: question about the libmvec.so.1 error.

Simple53 opened this issue · 3 comments

Simple53 commented

Hi,
The Macs3 callpeak reported the error below, how could I fix it?

  File "/share/home/zhou3lab/zhangxinpei/bioapp/miniconda3/envs/macs3/bin/macs3", line 727, in <module>
    main()
  File "/share/home/zhou3lab/zhangxinpei/bioapp/miniconda3/envs/macs3/bin/macs3", line 47, in main
    from MACS3.Commands.callpeak_cmd import run
  File "/share/home/zhou3lab/zhangxinpei/bioapp/miniconda3/envs/macs3/lib/python3.8/site-packages/MACS3/Commands
    from MACS3.Utilities.OptValidator import opt_validate_callpeak
  File "/share/home/zhou3lab/zhangxinpei/bioapp/miniconda3/envs/macs3/lib/python3.8/site-packages/MACS3/Utilitie
    from MACS3.IO.Parser import BEDParser, ELANDResultParser, ELANDMultiParser, \
  File "MACS3/IO/Parser.pyx", line 30, in init MACS3.IO.Parser
  File "MACS3/Signal/FixWidthTrack.pyx", line 28, in init MACS3.Signal.FixWidthTrack
  File "MACS3/Signal/Pileup.pyx", line 23, in init MACS3.Signal.Pileup
  File "MACS3/Signal/BedGraph.pyx", line 23, in init MACS3.Signal.BedGraph
  File "MACS3/Signal/ScoreTrack.pyx", line 23, in init MACS3.Signal.ScoreTrack
ImportError: libmvec.so.1: cannot open shared object file: No such file or directory
taoliu commented

@Simple53 Could you use the following template for 'bug report' to provide more detail on this issue? Thank you!

Describe the bug
A clear and concise description of what the bug is.

To Reproduce
Steps to reproduce the behavior. If possible, could you share the data with us?

Expected behavior
A clear and concise description of what you expected to happen.

Screenshots
If applicable, add screenshots to help explain your problem.

System (please complete the following information):

  • OS: [e.g. Linux, Mac OSX] [note: Windows NOT supported]
  • Python version [e.g. 3.7.1]
  • Numpy version [e.g. 1.17.0]
  • MACS Version [e.g. 2.2.4]

Additional context
Add any other context about the problem here.

yikiii commented

@Simple53 Could you use the following template for 'bug report' to provide more detail on this issue? Thank you!

Describe the bug A clear and concise description of what the bug is.

To Reproduce Steps to reproduce the behavior. If possible, could you share the data with us?

Expected behavior A clear and concise description of what you expected to happen.

Screenshots If applicable, add screenshots to help explain your problem.

System (please complete the following information):

  • OS: [e.g. Linux, Mac OSX] [note: Windows NOT supported]
  • Python version [e.g. 3.7.1]
  • Numpy version [e.g. 1.17.0]
  • MACS Version [e.g. 2.2.4]

Additional context Add any other context about the problem here.

same problem, installed with conda

         source /nfs3/public2/User/user/miniconda3/bin/activate macs3 && \
         macs3 callpeak -t /nfs6/public2/User/user/project//03.bam/bam/sh_IP.bam -c /nfs6/public2/User/user/project/03.bam/bam/sh_input1.bam -f BAMPE -g mm --outdir /nfs6/public2/User/user/test/peak2/ -q 0.05 -n S -B 2> /nfs6/public2/User/user/test/peak2/sh_macs3.log

Traceback (most recent call last):
  File "/nfs3/public2/User/user/miniconda3/envs/macs3/bin/macs3", line 727, in <module>
    main()
  File "/nfs3/public2/User/user/miniconda3/envs/macs3/bin/macs3", line 47, in main
    from MACS3.Commands.callpeak_cmd import run
  File "/nfs3/public2/User/user/miniconda3/envs/macs3/lib/python3.8/site-packages/MACS3/Commands/callpeak_cmd.py", line 24, in <module>
    from MACS3.Utilities.OptValidator import opt_validate_callpeak
  File "/nfs3/public2/User/user/miniconda3/envs/macs3/lib/python3.8/site-packages/MACS3/Utilities/OptValidator.py", line 24, in <module>
    from MACS3.IO.Parser import BEDParser, ELANDResultParser, ELANDMultiParser, \
  File "MACS3/IO/Parser.pyx", line 30, in init MACS3.IO.Parser
  File "MACS3/Signal/FixWidthTrack.pyx", line 28, in init MACS3.Signal.FixWidthTrack
  File "MACS3/Signal/Pileup.pyx", line 23, in init MACS3.Signal.Pileup
  File "MACS3/Signal/BedGraph.pyx", line 23, in init MACS3.Signal.BedGraph
  File "MACS3/Signal/ScoreTrack.pyx", line 23, in init MACS3.Signal.ScoreTrack
ImportError: libmvec.so.1: cannot open shared object file: No such file or directory
matteozoia4 commented

Got the same issue using Macs3.

Linux
Conda=4.14.0
Python=3.8.18
Macs3=3.0.0a6