maesaar

maesaar's Stars

• Asabeneh/30-Days-Of-Python

  30 days of Python programming challenge is a step-by-step guide to learn the Python programming language in 30 days. This challenge may take more than100 days, follow your own pace. These videos may help too: https://www.youtube.com/channel/UC7PNRuno1rzYPb1xLa4yktw

  Language:Python41.5k8051427.9k

• covid19india/covid19india-react

  Tracking the impact of COVID-19 in India

  Language:JavaScript6.9k2801.6k3.4k

• makcedward/nlp

  :memo: This repository recorded my NLP journey.

  Language:Python1.1k5011326

• jtleek/reviews

  Writing reviews of academic papers

  467363104

• oschwengers/bakta

  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

  Language:Python4321323153

• gtonkinhill/panaroo

  An updated pipeline for pangenome investigation

  Language:Python2621226633

• MrOlm/drep

  Rapid comparison and dereplication of genomes

  Language:Python249822336

• labgem/PPanGGOLiN

  Build a partitioned pangenome graph from microbial genomes

  Language:Python2401313828

• TimoLassmann/kalign

  A fast multiple sequence alignment program.

  Language:C12464028

• moshi4/ANIclustermap

  A tool for drawing ANI clustermap between all-vs-all microbial genomes

  Language:Python673149

• ablab/viralVerify

  viralVerify: viral contig verification tool

  Language:Python65141312

• tasuwo/SwiftRPG

  A simple RPG game written in Swift using SpriteKit

  Language:Swift52418

• gtonkinhill/panstripe

  post processing of bacterial pangenome gene presence/absence matrices

  Language:R502166

• ukhsa-collaboration/PHEnix

  Public Health England SNP calling pipeline.

  Language:Python3614408

• tseemann/sixess

  🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files

  Language:Shell23792

• denglab/SeqSero

  Salmonella serotyping from genome sequencing data

  Language:Python11101712

• loganroberts/tinyRPG

  Swift 5 based turn based RPG game using GameplayKit and SpriteKit. WIP

  Language:Swift11260

• BessieChen/Coursera-Genome-Assembly-Programming-Challenge

  Assembled Phi-X174 genome using Overlap Graph, Kmer Composition and De-Bruijn Graph.

  Language:Java78

• ssi-dk/bifrost

  63556

• narning1992/aiSource

  Repository for the paper "Machine learning to predict the source of campylobacteriosis using whole genome data"

  Language:Python5112

• tseemann/bowkaster

  cgMLST from FASTQ reads

  4501

• metebalci/fasta2png

  PNG generator for nucleotide and protein sequences in FASTA format

  Language:Python3321

• cenesis/cano-wgMLST

  A Platform for Epidemiological Investigation and Comparative Genomic Analysis

  Language:Perl2020

• jizhang-nz/aln2scoary

  Finding association of point mutations and phenotypic traits

  Language:Python2100

• Sarokrishna/Time-series-forecast-using-SARIMAX-model

  The forecast of the number of campylobacteriosis cases in Victoria for the next 5 years can be analysed by using a time series machine learning and statistical algorithm. From 2020 to 2024, the outbreak of this bacterial infection is on gradual raise denoting the positive trend and a seasonal pattern can be observed of the infection in Australia. As the world needs to begin following stringent hygienic practices due to the current pandemic outbreaks, campylobacteriosis should also be taken seriously as it predicted to have almost 49,000 cases in 2025

  Language:Jupyter Notebook2

• andrewjpage/assembly_improvement

  Language:Perl1300

• Nicolas-Radomski/PairedEndAssemblyConda

  Worflow performing de novo assembly of bacterial genomes from paired-end reads

  Language:Python1

• Nicolas-Radomski/PairedEndVariantConda

  Workflow performing variant calling analysis of bacterial genomes from paired-end reads

  Language:Python1

• Nicolas-Radomski/VariantAlignmentConda

  Workflow performing variant compilation of bacterial genomes from varaint calling analysis

  Language:Python1

• Nicolas-Radomski/VariantFastaConda

  Workflow producing a multi-fasta file for downstream bacterial phylogenomic analyses from variant calling analysis

  Language:Python1