main.py

Question

main.py

szc19990412 opened this issue 3 years ago · 6 comments

szc19990412 commented 3 years ago

Will the code of main.py be announced? And the compressed files in datasets_csv cannot be decompressed. Looking forward to your reply！

Answer 1 · 2021-07-30T17:01:25.000Z

Hi @szc19990412 - thank you for interest in our repository! We are still cleaning up the code + data preprocessing, and will let you know when it is ready!

Answer 2 · 2021-09-09T09:08:12.000Z

I want to know how your data changed from 1024-dimensional features to graphs? Can this part of the code be made public?

Answer 3 · 2021-09-11T15:32:52.000Z

@chengzs123 - this part of the code will be made public. For the time being, you can walk through the Inference Benchmark .ipynb to see how loading graph features would work.

Answer 4 · 2021-10-04T05:04:02.000Z

@szc19990412 @szc19990412 please see the most recent update, in which:

main.py has been released
the Jupyter Notebook script for graph creation is also released

Answer 5 · 2021-10-10T05:21:29.000Z

@Richarizardd Hello，where is the script for graph creation ?

Answer 6 · 2021-10-10T06:34:10.000Z

Hi @RRG29 - Thank you for following-up. Script for WSI-Graph Construction is uploaded here via this Jupyter Notebook. Will update README on instructions on how to use it, but should be self-explanatory if you are familiar with the CLAM feature extraction pipeline. Given the h5 files (which contains the x,y-coordinates for each patch), we can do fast K-NN on these coordinates via HNSW.