marius10p

data (neuro) scientist, Kilosort, Cellpose and Suite2p

Group LeaderHHMI Janelia Research Campus

Pinned Repositories

donuts
detect donut-shaped cells in 2D images
Language:MATLAB3 3 11
labCode
Language:MATLAB2 2 00
NeuralDataScienceCSHL2019
Coding exercises for Neural Data Science at CSHL in 2019
Language:Jupyter Notebook28 12 113
NeuralDynamics
Language:Matlab30
cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
Language:Jupyter Notebook1.3k 29 880388
facemap
Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.
Language:Python154 10 10261
Kilosort
Fast spike sorting with drift correction for up to a thousand channels
Language:Python464 33 726240
rastermap
a visualization method for neural data
Language:Python172 11 2343
stringer-et-al-2019
paper figure code
Language:Python25 6 113
suite2p
cell detection in calcium imaging recordings
Language:Jupyter Notebook349 18 899241

marius10p/NeuralDataScienceCSHL2019
Coding exercises for Neural Data Science at CSHL in 2019
Language:Jupyter Notebook28 12 113
marius10p/donuts
detect donut-shaped cells in 2D images
Language:MATLAB3 3 11
marius10p/NeuralDynamics
Language:Matlab30
marius10p/labCode
Language:MATLAB2 2 00
marius10p/DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals
11
marius10p/gui2P
GUI for manual sorting of ROIs
Language:Matlab1 6 01
marius10p/rfOnline
Language:Matlab1 3 0
marius10p/Spikefinder-Elephant
Keras network for spike detection from calcium traces
Language:Python1 2 0
marius10p/suite2p-for-neurofinder
1 3 01
marius10p/das_rrr
Interactive Tutorial to Reduced Rank Regression
Language:Jupyter Notebook1 0
marius10p/fast-oopsi
a repository containing everything relevant to our fast non-negative deconvolution work
Language:Matlab1 0