Issues
- 0
Identify "true" misorientations by comparing edges to and from nodes with their Strand-seq inferred orientation
#51 opened by mir-cat - 0
- 0
- 0
Convert short R scripts to inline code?
#50 opened by mir-cat - 0
What parameters to expose in config file?
#49 opened by mir-cat - 0
- 0
- 1
- 1
v0.3.1-alpha: env setup is generally faulty
#43 opened by ptrebert - 2
- 1
v0.3.1-alpha: isolate env setup
#40 opened by ptrebert - 1
count_haplotypes hclust
#32 opened by wharvey31 - 3
Why is PEAR discarding so many reads?
#33 opened by mir-cat - 1
v0.3.1-alpha: something wrong with conda envs
#39 opened by ptrebert - 0
v0.3.1-alpha: building of Renv not specified
#41 opened by ptrebert - 0
- 0
- 5
count_haplotype_markers
#31 opened by wharvey31 - 3
Error with count_sseq_alignments
#30 opened by wharvey31 - 5
combine_homology error
#29 opened by wharvey31 - 1
- 0
- 2
Modify pipeline to handle strandseq files to potentially handle multiple strandseq suffixes
#15 opened by mir-cat - 1
- 6
current prototype: Snakemake bug
#1 opened by ptrebert - 1
- 0
change logging behavior
#10 opened by ptrebert - 0
Managing why nodes are removed from the pipeline is super annoying and needs to be improved
#17 opened by mir-cat - 0
Need to break phasing step into two, one that sorts libraries, and one that calculates haplotype counts
#16 opened by mir-cat - 0
Make scripts folder able to be used without putting it in the working directory
#18 opened by mir-cat - 1
update readme to use snakemake runner yaml
#9 opened by ptrebert - 0
Add note to readme explaining to what extent the algorithm is non-deterministic
#20 opened by mir-cat - 0
Add note to readme explaining that the path to the scripts folder needs to be bound in the singularity options
#21 opened by mir-cat - 8
haploclust R env
#5 opened by ptrebert - 0
"improve habits": syntax error in script
#3 opened by ptrebert - 0
debug leftover?
#7 opened by ptrebert - 0
- 0
Path operations in Python
#8 opened by ptrebert - 0
- 1
- 0
use informative file extensions
#4 opened by ptrebert - 2
fail w/o strandseq
#2 opened by ptrebert