Pinned Repositories
bioinf-scripts
Farmpy
Python3 package to handle job submission to a compute farm
ftep
ENA metadata queries
pacbio-14-nctc-assemblies
14 NCTC samples for testing PacBio assemblers
pathogen-informatics-training
Scaffolder-evaluation
Wrapper scripts to run genome assembly scaffolding tools and scripts to analyse the output for accuracy.
slurmzy
Slurm wrapper scripts
tna
ushonium
usher + taxonium
varifier
Variant call verification
martinghunt's Repositories
martinghunt/Scaffolder-evaluation
Wrapper scripts to run genome assembly scaffolding tools and scripts to analyse the output for accuracy.
martinghunt/pacbio-14-nctc-assemblies
14 NCTC samples for testing PacBio assemblers
martinghunt/primer3tools
Design PCR primers and check uniqueness across multiple genomes
martinghunt/annet
Test uploading assemblies to github
martinghunt/assembly-stats
Get assembly statistics from FASTA and FASTQ files
martinghunt/assembly_improvement
martinghunt/Assembly_tools
Scripts relating to genome assemblies
martinghunt/Bio-Metagenomics
martinghunt/Bio-VertRes-Config
martinghunt/bio_assembly_refinement
Tools to refine/finish an assembly
martinghunt/Farm_blast
Python3 module to run blast+ or blastall in parallel on an LSF compute farm
martinghunt/gubbins
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
martinghunt/homebrew-python
:snake: Python formulae for Homebrew
martinghunt/homebrew-science
:microscope: Scientific formulae for the Homebrew package manager
martinghunt/iva-publication
Supplementary scripts and data for the IVA publication
martinghunt/pathogens-vm
To build a virtual machine with some Sanger pathogens software installed
martinghunt/rapid_annotation_transfer_tool
RATT: A tool for transferring genomic annotations between genomes
martinghunt/trimmomatic
Read trimming tool for Illumina NGS data.
martinghunt/update_pipeline