Mykrobe-tools

Pinned Repositories

clockwork
CRyPTIC data processing pipelines
Language:HTML1 1 01
mykrobe
Antibiotic resistance prediction in minutes
Language:Python106 11 10527
mykrobe-atlas
1 3 00
mykrobe-atlas-api
Server API for Atlas
Language:JavaScript1 4 30
mykrobe-atlas-distance-data
Pipelines and scripts for calculating genetic distance between samples
Language:Python1 4 00
mykrobe-atlas-jsonschema
JSON Schemas associated with Mykrobe Atlas
Language:JavaScript1 2 00
mykrobe-atlas-keycloak
Keycloak configuration for Atlas
Language:JavaScript00
mykrobe-atlas-kmersearch-api
Language:Python0 6 00
mykrobe-atlas-kmersearch-api-client
REST API client library for accessing Mykrobe Atlas Kmersearch API
Language:Python0 4 00
mykrobe-website
Language:JavaScript0 4 00

Mykrobe-tools's Repositories

Mykrobe-tools/mykrobe
Antibiotic resistance prediction in minutes
Language:Python106 11 10527
Mykrobe-tools/clockwork
CRyPTIC data processing pipelines
Language:HTML1 1 01
Mykrobe-tools/mykrobe-atlas
1 3 00
Mykrobe-tools/mykrobe-atlas-api
Server API for Atlas
Language:JavaScript1 4 30
Mykrobe-tools/mykrobe-atlas-distance-data
Pipelines and scripts for calculating genetic distance between samples
Language:Python1 4 00
Mykrobe-tools/mykrobe-atlas-jsonschema
JSON Schemas associated with Mykrobe Atlas
Language:JavaScript1 2 00
Mykrobe-tools/atlas_ena_curation
Automated pipeline built on top of clockwork and the kmersearch-api for download and processing of tb samples from the ENA
Language:Python0 4 00
Mykrobe-tools/mccortex
Cortex on steroids: for larger populations with better assembly
Language:C0 2 01
Mykrobe-tools/mykrobe-atlas-distance-api
Language:Python0 4 50
Mykrobe-tools/mykrobe-atlas-distance-client
REST API client library for accessing Mykrobe Atlas distance API
Language:Python00
Mykrobe-tools/mykrobe-atlas-id-migrator
Language:Python0 6 00
Mykrobe-tools/mykrobe-atlas-keycloak
Keycloak configuration for Atlas
Language:JavaScript00
Mykrobe-tools/mykrobe-atlas-kmersearch-api
Language:Python0 6 00
Mykrobe-tools/mykrobe-atlas-kmersearch-api-client
REST API client library for accessing Mykrobe Atlas Kmersearch API
Language:Python0 4 00
Mykrobe-tools/mykrobe-atlas-tracking-api
Sample tracking service for Mykrobe Atlas project
Language:Python0 5 00
Mykrobe-tools/mykrobe-atlas-tracking-client
Language:Python0 6 00
Mykrobe-tools/mykrobe-data
Data for mykrobe command line tool
0 5 02
Mykrobe-tools/mykrobe-lineage-test
Test species and lineage calls made by mykrobe
Language:Python0 4 01
Mykrobe-tools/mykrobe-website
Language:JavaScript0 4 00
Mykrobe-tools/mykrobe-atlas-analysis-api
The analysis API and task manager for Mykrobe atlas
Language:Python
Mykrobe-tools/mykrobe-atlas-api-k8
Language:Shell
Mykrobe-tools/mykrobe-atlas-background-variants-db
A Mongo db which hosts tb background variants to support Mykrobe make probes functionality for Atlas
Language:Dockerfile4 0
Mykrobe-tools/mykrobe-atlas-data-upload
Documentation and scripts for uploading preprocessed analysis data to Kubernetes hosted applications.
Language:Python
Mykrobe-tools/mykrobe-atlas-insight
Insight pipeline for Mykrobe Atlas
Language:Shell
Mykrobe-tools/mykrobe-atlas-k8
Language:Shell
Mykrobe-tools/mykrobe-atlas-kafka-consumer
Language:Java
Mykrobe-tools/mykrobe-atlas-kmersearch-pipeline
Language:Nextflow
Mykrobe-tools/mykrobe-atlas-pipelines