Issues
- 0
Trouble running Mykrobe with a custom species
#184 opened by Danderson123 - 3
- 7
species and lineage predictions
#181 opened by alantsangmb - 0
Windows build breaking on numpy install errors
#178 opened by martinghunt - 0
Reporting difference between csv and json
#175 opened by AntonS-bio - 7
- 0
Windows build failing
#172 opened by martinghunt - 3
- 2
Run more than one sample
#171 opened by Leobpfbac - 1
Distinguish bovis from bovis-sub-BCG
#147 opened by iqbal-lab - 1
mykrobe_gene_deletion
#167 opened by arnoldbain - 0
- 5
link to Hawkey 2020 publication on S sonnei panel?
#165 opened by kapsakcj - 6
Overlapping/conflicting variants?
#110 opened by flashton2003 - 1
Resistance variant missing gene identifier in panel
#132 opened by mbhall88 - 8
OS error
#151 opened by Bio-finder - 2
Update mykrobe.com download links 0.9.0 -> 0.10.0
#157 opened by martinghunt - 16
conda installs v0.6.1 by default / "unrecognized arguments: --sample --species"
#162 opened by davidjstudholme - 0
Update panel with WHO catalogue
#149 opened by mbhall88 - 2
Erroneous mutation calls in version 0.9.0: AGC(Serine) => AAC(Asparagine not valine)
#156 opened by davidjstudholme - 2
Switch to Github Actions
#143 opened by mbhall88 - 1
Move all CI to github actions
#150 opened by martinghunt - 0
Move away from pyvcf
#142 opened by mbhall88 - 3
- 0
Default error rate for Illumina
#133 opened by mbhall88 - 2
ONT flag default settings
#134 opened by mbhall88 - 0
review method for guessing technology
#145 opened by iqbal-lab - 7
Custom resistance probes
#137 opened by arnoldbain - 0
Report panel version used in JSON output
#119 opened by martinghunt - 1
Bad assumption about file name and chromosome name
#140 opened by mbhall88 - 2
Inconsistent kmer size defaults
#141 opened by mbhall88 - 2
- 0
Weird ALT call not being treated as ALT
#139 opened by mbhall88 - 2
Remove skeleton data
#136 opened by mbhall88 - 3
- 7
make-probes genbank file key error
#131 opened by arnoldbain - 10
How do I run command line?
#130 opened by peflanag - 2
mykrobe calls the wrong amino acid change for first drug resistance SNP on a bottom strand gene
#127 opened by tw1nk0i - 1
Strange error with --ont flag
#123 opened by iqbal-lab - 1
Easy to understand README needed
#124 opened by iqbal-lab - 2
Missed call due to high coverage
#121 opened by mbhall88 - 0
tmpdir not removed
#113 opened by mbhall88 - 0
Memory CLI param not being used
#114 opened by mbhall88 - 1
- 3
- 2
AttributeError of make-probes function
#108 opened by Owen-haha - 2
Running mykrobe-predict on ONT and Illumina data
#107 opened by nilay-p - 1
Travis release build failing on mac
#106 opened by martinghunt - 0
Taxon threshold default values in code
#105 opened by martinghunt - 1
make-probes ValueError
#101 opened by jhawkey