Mykrobe-tools/mykrobe

review method for guessing technology

iqbal-lab opened this issue · 0 comments

see comment here

if args.guess_sequence_method and kmer_count_error_rate > 0.001:
logger.warning("Guess sequence method is on, and we've guessed ONT")
args.ont = True

Currently we estimate error rate and guess tech from that - I dont know why we dont use read length instead