masa6161's Stars
SoftFever/OrcaSlicer
G-code generator for 3D printers (Bambu, Prusa, Voron, VzBot, RatRig, Creality, etc.)
MouseLand/cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
DustinWatts/FreeTouchDeck
For interfacing with Windows/macOS/Linux using an ESP32, a touchscreen and BLE.
flatironinstitute/CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
MouseLand/suite2p
cell detection in calcium imaging recordings
bastibe/Violinplot-Matlab
Violin Plots for Matlab
HelmchenLabSoftware/Cascade
Calibrated inference of spiking from calcium ΔF/F data using deep networks
bahanonu/ciatah
CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).
cabooster/SRDTrans
SRDTrans: Spatial redundancy transformer for self-supervised fluorescence image denoising
nel-lab/FIOLA
BadenLab/LED-Zappelin
An OpenSource LED stimulator for visual and optogenetics stimulation in combination with 2-photon recording
richard-warren/SignalBuddy
Arduino Uno based signal generator for scientific applications.
vsnnlab/AMaSiNe
churchlandlab/WidefieldImager
Pre-processing pipeline for widefield data
RichieHakim/ROICaT
Region Of Interest Classification and Tracking
DeNardoLab/DeepTraCE
Deep-learning based pipeline for analysis of whole-brain light sheet microscopy images
golshanilab/UCLA_2P_Miniscope
UCLA Multiphoton Miniature Microscope
minoue-xx/MATLAB-example-for-An-Introduction-to-Data-Visualization
ryhattori/dspca
Demixed subspace principal component analysis (dsPCA). This is a dimensionality reduction algorithm for high-dimensional data such as neural population activity.
TinLab/ENS2
Effective and Efficient Neural Networks for Spike Inference from In Vivo Calcium Imaging
thomasdeneux/brick
a general-purpose Matlab toolbox
Zapit-Optostim/AllenAtlasTopDown
Top-down view of the Allen Atlas in stereotaxic coords
DodsonLab/WaterR
WaterR is a device for controlling fluid intake in experimental rodents
zqwei/explore_ephys_data
This is repo for the hands-on lecture of JHU bootcamp on 08/21/2017
ucsb-goard-lab/Two-photon-calcium-post-processing
hoang-atr/HA_time
Hyper-acuity algorithm for estimating spike timing from Calcium imaging
ucsb-goard-lab/SignMapping
LaubachLab/LED-matrices
Design Files and Extended Data for manuscript "An open source platform for presenting dynamic visual stimuli"
LurLab-UCI/HERBs
Head-fixed Environment for Rodent Behaviors
taoizm/mcbrewer
MATLAB colormaps based on Cynthia Brewer's color schemes