masa6161

masa6161's Stars

• SoftFever/OrcaSlicer

  G-code generator for 3D printers (Bambu, Prusa, Voron, VzBot, RatRig, Creality, etc.)

  Language:C++6.6k1244.2k766

• MouseLand/cellpose

  a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

  Language:Jupyter Notebook1.3k29862376

• DustinWatts/FreeTouchDeck

  For interfacing with Windows/macOS/Linux using an ESP32, a touchscreen and BLE.

  Language:C6224596126

• flatironinstitute/CaImAn

  Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

  Language:Python62046759364

• MouseLand/suite2p

  cell detection in calcium imaging recordings

  Language:Jupyter Notebook34418892240

• bastibe/Violinplot-Matlab

  Violin Plots for Matlab

  Language:MATLAB2491357105

• HelmchenLabSoftware/Cascade

  Calibrated inference of spiking from calcium ΔF/F data using deep networks

  Language:Jupyter Notebook113104131

• bahanonu/ciatah

  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).

  Language:MATLAB8074420

• cabooster/SRDTrans

  SRDTrans: Spatial redundancy transformer for self-supervised fluorescence image denoising

  Language:Python65496

• nel-lab/FIOLA

  Language:Python29764

• BadenLab/LED-Zappelin

  An OpenSource LED stimulator for visual and optogenetics stimulation in combination with 2-photon recording

  Language:Jupyter Notebook24608

• richard-warren/SignalBuddy

  Arduino Uno based signal generator for scientific applications.

  Language:C++185

• vsnnlab/AMaSiNe

  Language:MATLAB138

• churchlandlab/WidefieldImager

  Pre-processing pipeline for widefield data

  Language:MATLAB105

• RichieHakim/ROICaT

  Region Of Interest Classification and Tracking

  Language:Python10415

• DeNardoLab/DeepTraCE

  Deep-learning based pipeline for analysis of whole-brain light sheet microscopy images

  Language:MATLAB97

• golshanilab/UCLA_2P_Miniscope

  UCLA Multiphoton Miniature Microscope

  Language:MATLAB7200

• minoue-xx/MATLAB-example-for-An-Introduction-to-Data-Visualization

  7201

• ryhattori/dspca

  Demixed subspace principal component analysis (dsPCA). This is a dimensionality reduction algorithm for high-dimensional data such as neural population activity.

  Language:Jupyter Notebook7303

• TinLab/ENS2

  Effective and Efficient Neural Networks for Spike Inference from In Vivo Calcium Imaging

  Language:Jupyter Notebook6201

• thomasdeneux/brick

  a general-purpose Matlab toolbox

  Language:HTML5608

• Zapit-Optostim/AllenAtlasTopDown

  Top-down view of the Allen Atlas in stereotaxic coords

  Language:MATLAB5110

• DodsonLab/WaterR

  WaterR is a device for controlling fluid intake in experimental rodents

  Language:C++4

• zqwei/explore_ephys_data

  This is repo for the hands-on lecture of JHU bootcamp on 08/21/2017

  Language:MATLAB4432

• ucsb-goard-lab/Two-photon-calcium-post-processing

  Language:MATLAB3101

• hoang-atr/HA_time

  Hyper-acuity algorithm for estimating spike timing from Calcium imaging

  Language:MATLAB23

• ucsb-goard-lab/SignMapping

  Language:MATLAB20

• LaubachLab/LED-matrices

  Design Files and Extended Data for manuscript "An open source platform for presenting dynamic visual stimuli"

  Language:C++11

• LurLab-UCI/HERBs

  Head-fixed Environment for Rodent Behaviors

  Language:MATLAB1

• taoizm/mcbrewer

  MATLAB colormaps based on Cynthia Brewer's color schemes

  Language:MATLAB10