matthewspeir

matthewspeir's Stars

• SpaceVim/SpaceVim

  A modular Vim/Neovim configuration

  Language:Vim Script20.3k3042.4k1.4k

• limetext/lime

  Open source API-compatible alternative to the text editor Sublime Text

  15.3k7504031.1k

• textmate/textmate

  TextMate is a graphical text editor for macOS 10.12 or later

  Language:Objective-C++14.2k95201.7k

• overleaf/overleaf

  A web-based collaborative LaTeX editor

  Language:JavaScript14.2k2111k1.5k

• LightTable/LightTable

  The Light Table IDE ⛺

  Language:Clojure11.7k4262.1k915

• slap-editor/slap

  Sublime-like terminal-based text editor

  Language:JavaScript6.1k141235216

• rsalmei/alive-progress

  A new kind of Progress Bar, with real-time throughput, ETA, and very cool animations!

  Language:Python5.6k49230207

• jqnatividad/qsv

  Blazing-fast Data-Wrangling toolkit

  Language:Rust2.5k1751772

• freedmand/semantra

  Multi-tool for semantic search

  Language:Python2.5k3462142

• mwyborski/Linux-Magic-Trackpad-2-Driver

  Language:C503355888

• captn3m0/boardgame-research

  List of research around modern boardgames.

  Language:XSLT36921416

• constantAmateur/SoupX

  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data

  Language:R259614836

• biowasm/biowasm

  WebAssembly modules for genomics

  Language:HTML223104924

• tabdelaal/scRNAseq_Benchmark

  Bench-marking classification tools for scRNA-seq data

  Language:Python18471656

• ViennaRNA/forna

  Create force-directed graphs of RNA secondary structures.

  Language:JavaScript10084731

• SCCAF/sccaf

  Single-Cell Clustering Assessment Framework

  Language:Jupyter Notebook9362619

• deweylab/CellO

  CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

  Language:Jupyter Notebook6562513

• immunomind/covid19

  🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.

  441013

• rargelaguet/scnmt_gastrulation

  scNMT-seq gastrulation

  Language:R427511

• songweige/scDGN

  Supervised Adversarial Alignment of Single-Cell RNA-seq Data

  Language:Jupyter Notebook29313

• ashleymaeconard/TIMEOR

  TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R

  Language:R17164

• gtDMMB/RNAStructViz

  Visualization, comparison, and analysis of RNA secondary structures via a cross-platform GUI

  Language:C173965

• HCBravoLab/scTreeViz

  R/Bioconductor package to interactively explore single cell clusters at multiple resolutions

  Language:R10323

• ucscGenomeBrowser/cellBrowser

  Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org

  Language:JavaScript9311

• FertigLab/scatterHatch

  Language:R7713

• hruffieux/atlasqtl

  atlasqtl R package - Fast global-local hotspot QTL detection

  Language:R6302

• kharchenkolab/cap-example

  An example of proposed CAP annotation view

  570

• mandricigor/batman

  Batman: Batch effect correction via minimum weight MAtchiNg

  Language:Python3311

• tanaylab/Meir_et_al_nat_gen_2020_clonemem

  Luria-Delbruck design, comparing transcriptome, methylome and exome of single-cells to hundreds of single-cell-derived clones

  Language:R230

• ucscXena/ux-resource-for-ucsc-genomics-institute

  1401