Pinned Repositories
labarchives-py
A python wrapper for interacting with the LabArchives API.
mcmero.github.io
My personal site.
sv_simu_pipe
Simulate SVs at different purity levels.
SVclone
A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.
SVclone_Rmarkdown
Generate plots and tables from the SVclone paper and supplementary
ec-dtu-pipe
Pipeline for performing differential transcript usage analysis using equivalence classes, transcript quantifications and/or exon counts
MINTIE
Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
nanopore-demux-count
Demultiplex reads and count sequences of interest from Nanopore data
nanopore-transfer-automation
Performs archiving and transfer of Nanopore sequencing data
mcmero's Repositories
mcmero/SVclone
A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.
mcmero/labarchives-py
A python wrapper for interacting with the LabArchives API.
mcmero/SVclone_Rmarkdown
Generate plots and tables from the SVclone paper and supplementary
mcmero/mcmero.github.io
My personal site.
mcmero/sv_simu_pipe
Simulate SVs at different purity levels.
mcmero/2016-01-21-training-prep
mcmero/bioconda-recipes
Conda recipes for the bioconda channel.
mcmero/ccube
mcmero/ccube-analysis
Results from ccube analyses in R markdown
mcmero/Clinker
Gene Fusion Visualiser
mcmero/insilico-mixture-pipeline
mcmero/perfect_phylogeny
An implementation of the perfect phylogeny and incomplete phylogeny algorithms, for building and inferring phylogenetic trees.
mcmero/python-novice-inflammation
Software Carpentry introduction to Python for novices using inflammation data.
mcmero/refpluspipeline
mcmero/Socrates
Socrates: Identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads
mcmero/sv_tools
A few tools for plotting and reasoning about genomic structural variants.
mcmero/TextualRealityExperienceEngine
Textual Reality Experience Engine : Text Adventure Game Engine
mcmero/workflow-template-nextflow
Template for building a small workflow in Nextflow