mdcao
Head of Data Science @TandemAI, former ML Scientist at Gritstone Bio and QuantumSi. Interested in Deep Learning, Information Theory and Bioinformaics
Tandem AIBoston, MA, USA
Pinned Repositories
3DLinker
An E(3) Equivariant Variational Autoencoder for Molecular Linker Design
algorithms
Minimal examples of data structures and algorithms in Python
alphafold3-pytorch
Implementation of Alphafold 3 in Pytorch
capsim
japsa
Just Another JAva Package for Sequence Analysis
npAnalysis
Software for Nanopore Analysis
npReader
Read nanopore sequence reads in real-time
npScarf
PhageXpress
Realtime grouping of insert sequences
xm
Expert Model
mdcao's Repositories
mdcao/npScarf
mdcao/npReader
Read nanopore sequence reads in real-time
mdcao/npAnalysis
Software for Nanopore Analysis
mdcao/capsim
mdcao/PhageXpress
Realtime grouping of insert sequences
mdcao/xm
Expert Model
mdcao/awesome-tensorflow
TensorFlow - A curated list of dedicated resources http://tensorflow.org
mdcao/cs231n.github.io
Public facing notes page
mdcao/graphmap
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html
mdcao/mdcao.github.io
mdcao/MicroManage
mdcao/numerical-linear-algebra
Free online textbook of Jupyter notebooks for fast.ai Computational Linear Algebra course
mdcao/open-science
:microscope: Open, reproducible science using Make, RMarkdown and Pandoc
mdcao/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
mdcao/prokka
Rapid prokaryotic genome annotation
mdcao/reinforcement-learning
Implementation of Reinforcement Learning Algorithms. Python, OpenAI Gym, Tensorflow. Exercises and Solutions to accompany Sutton's Book and David Silver's course.
mdcao/seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
mdcao/seqanpy
Fast pairwise sequence alignment using SeqAn, in Python.
mdcao/simcap
Simulation of targeted capture sequencing
mdcao/streamformatics
Real-time species-typing visualisation for nanopore data.
mdcao/tensorflow
Computation using data flow graphs for scalable machine learning
mdcao/TensorFlow-2.x-Tutorials
TensorFlow 2.x version's Tutorials and Examples, including CNN, RNN, GAN, Auto-Encoders, FasterRCNN, GPT, BERT examples, etc. TF 2.0版入门实例代码，实战教程。
mdcao/XMas
A genetic distance measure for aligned sequences