Pinned Repositories
align_unmapped
Quantification of unmapped (viral, microbial) reads obtained from high-throughput barcoded libraries such as 10x Genomics
AML_DLI
single-cell data analysis using python
BayesMadeSimple
Code for a tutorial on Bayesian Statistics by Allen Downey.
bypass-paywalls-chrome
Bypass Paywalls web browser extension for Chrome and Firefox.
methylation
nanoranger
simplified cellranger for long-read data
scDNA_RNA
slide-recon
ultima_nextflow
ultima_tools
mehdiborji's Repositories
mehdiborji/nanoranger
simplified cellranger for long-read data
mehdiborji/align_unmapped
Quantification of unmapped (viral, microbial) reads obtained from high-throughput barcoded libraries such as 10x Genomics
mehdiborji/slide-recon
mehdiborji/AML_DLI
single-cell data analysis using python
mehdiborji/BayesMadeSimple
Code for a tutorial on Bayesian Statistics by Allen Downey.
mehdiborji/bypass-paywalls-chrome
Bypass Paywalls web browser extension for Chrome and Firefox.
mehdiborji/EM-CNN
Deep learning pipeline for classification of histopathology images
mehdiborji/fastq_tools
A multi-language benchmarking project to explore limits of languages vs disk I/O
mehdiborji/git-scm.com
The git-scm.com website. Note that this repository is only for the website; issues with git itself should go to https://git-scm.com/community.
mehdiborji/ims-to-tif-converter
Converts Fusion IMS files to TIF files
mehdiborji/knn-smoothing
K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data
mehdiborji/library
Reference V, D, J, C genes
mehdiborji/LR_colocalization
Permutation testing on ligand-receptor coexpression on spatial data
mehdiborji/methylation
mehdiborji/pychopper
A tool to identify, orient, trim and rescue full length cDNA reads
mehdiborji/scDNA_RNA
mehdiborji/slide-annotation
mehdiborji/ultima_nextflow
mehdiborji/ultima_tools
mehdiborji/pyexample
A exampe Python repository for scientific software
mehdiborji/RCTD
mehdiborji/rust-fundamentals
Rust Bootcamp Week 2: Rust fundamentals
mehdiborji/telescope
Quantification of transposable element expression using RNA-seq