Pinned Repositories
gdc_bam_library_exomekit_docker
Melanomas-ImmuneResistance-2019
This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources of T cell exclusion linked to immunotherapy clinical outcomes".
microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
scOh
Single Cell Atlas - PDAC
Single-cell-multi-omic-profiling-of-glioblastoma-associated-myeloid-cells
Single-cell multi-omic profiling of glioblastoma-associated myeloid cells
merckey's Repositories
merckey/scOh
Single Cell Atlas - PDAC
merckey/ASAShortCourse-MultiOmics
Short Course on Multi-Omics
merckey/build_rnaseq_paper_public
Code for the paper: Impact of genome build on RNA-seq interpretation and diagnostics
merckey/CCI
Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information
merckey/CCI_benchmark
forked from wanglabtongji / CCI
merckey/csf_aging
Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment
merckey/GBmap
Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolution) and how to produce the figures.
merckey/GeoMxWorkflows
Workflows for analyzing data with the GeomxTools package and subsequent GeoMx related packages
merckey/GermanosProstatescRNASeq
merckey/Hamed_Nat-Commun_2022
A brain precursor atlas reveals the acquisition of developmental-like states in adult cerebral tumours
merckey/Han-et-al.-Single-cell-multi-omics
Pipieline in R to analyze single-cell-multi-omics
merckey/hbctraining_Intro-to-ChIPseq-flipped
merckey/HEIP
merckey/luca
Single-cell Lung Cancer Atlas with 1.2M cells
merckey/monocle3-dockerfiles
Listing docker files used in https://hub.docker.com/u/hc27oclock
merckey/OSCC-SpatialTranscriptomics
Spatial Transcriptomic Analysis of OSCC samples
merckey/ProstateCancerAnalysis
single cell and spatial
merckey/RIMA_pipeline
merckey/rockefelleruniversity.github.io
merckey/rwb
Cross-platform command line executable to access your projects and files.
merckey/sanbomics_scripts
scripts and notebooks from sanbomics
merckey/scFoundation
merckey/SCP
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
merckey/scRNASeq_PLK1_LUAD
merckey/single_cell_tutorial_Starlitnightly
单细胞分析的中文pipeline
merckey/tabula-muris
Code and annotations for the Tabula Muris single-cell transcriptomic dataset.
merckey/Tail-Loss-Primates
merckey/TCM
Codes used in pan-T cell analysis
merckey/TWAS_HERVs-SCZ
merckey/zero-shot-scfoundation