merckey

merckey's Stars

• amueller/introduction_to_ml_with_python

  Notebooks and code for the book "Introduction to Machine Learning with Python"

  Language:Jupyter Notebook7.4k3661494.6k

• maxplanck-ie/snakepipes

  Customizable workflows based on snakemake and python for the analysis of NGS data

  Language:Python3792046485

• mousepixels/sanbomics_scripts

  scripts and notebooks from sanbomics

  Language:Jupyter Notebook3421124131

• czbiohub-sf/tabula-muris

  Code and annotations for the Tabula Muris single-cell transcriptomic dataset.

  Language:HTML1851116190

• stevekm/IGV-snapshot-automator

  Script to automatically create and run IGV snapshot batchscripts

  Language:Python13772850

• LewisLabUCSD/Ligand-Receptor-Pairs

  Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.

  1198233

• ixxmu/mp_duty

  抓取网络文章到github issues保存

  Language:Ruby11035.2k30

• AlexsLemonade/OpenPBTA-analysis

  The analysis repository for the Open Pediatric Brain Tumor Atlas Project

  Language:HTML991666468

• vanallenlab/comut

  CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots

  Language:Python8781826

• kamimrcht/REINDEER

  REINDEER REad Index for abuNDancE quERy

  Language:C++567216

• fpbarthel/GLASS

  GLASS consortium

  Language:R3779313

• bcbio/bcbio_validations

  Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses

  Language:HTML317211

• najoast/wow_forum

  全栈游戏开发 - 魔兽世界论坛

  251356

• bcbio/bcbio_validation_workflows

  A community menagarie of automated variant validations using bcbio and the Common Workflow Language

  Language:Common Workflow Language209312

• franklinhuanglab/scRNA-seq-Analysis-of-Prostate-Cancer-Samples

  Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial cell states"

  Language:R18201

• littlegolden/syntax-highlight-word

  A revived project of Syntax Highlight Code for planetB.

  Language:JavaScript18239

• LieberInstitute/spatialDLPFC

  spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples

  Language:HTML1791463

• mbourgey/EBI_cancer_workshop_CNV

  hands-on for NGS/SNParray CNV call trainning

  Language:Shell174211

• ShixiangWang/copynumber

  The "copynumber" R package with support for hg38

  Language:R17156

• wesbarnett/diffusion-map

  Comparison of principal components analysis with diffusion maps on toy data sets and a molecular simulation trajectory

  Language:Fortran17303

• jnoms/virID

  Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.

  Language:Python11303

• theislab/ncem_benchmarks

  Language:Jupyter Notebook8462

• BarryD237/D-O-Connor

  Language:Shell7101

• bzhanglab/GISTIC2_example

  a example script and reference files to run GISTIC2

  Language:Shell7213

• Yang-Chen-Lab-co/COVID19-scATAC-seq

  5143

• kids-first/kf-tumor-workflow

  Language:Common Workflow Language2610

• szczurek-lab/qupath-spot-utils

  Scripts for processing microarray spots in QuPath

  Language:Groovy2110

• merckey/Melanomas-ImmuneResistance-2019

  This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources of T cell exclusion linked to immunotherapy clinical outcomes".

  Language:R1000

• merckey/scOh

  Single Cell Atlas - PDAC

  Language:HTML1000

• merckey/Single-cell-multi-omic-profiling-of-glioblastoma-associated-myeloid-cells

  Single-cell multi-omic profiling of glioblastoma-associated myeloid cells

  Language:R1000