metaGmetapop/metapop

Issues

• Error while Refining SNVs into SNPs step

  #22 opened 2 years ago by ShailNair
  3

• Description of the result file

  #35 opened 2 months ago by deadblackhole
  0

• Can MetaPop be used to calculate the gene-wise Fst?

  #34 opened 5 months ago by 473021677
  0

• ZeroDivisionError: division by zero

  #33 opened 7 months ago by hdflorezr
  0

• FileNotFoundError ... _initial.bam.bai

  #32 opened a year ago by funnell
  1

• Metapop for viral bins microdiversity calculation

  #30 opened a year ago by MengzhiJ
  0

• 1. Suitable for the analysis of ssDNA viral population? 2. FileNotFoundError: 'MetaPop/09.Linked_SNPs/range_131_reads.txt'

  #24 opened 2 years ago by ChenTianYi99
  4

• Infinite pN/pS values

  #31 opened a year ago by azk001
  0

• There was an error in a '. bam' file while running Linking SNPs, but the other files are fine

  #29 opened a year ago by Lilingyuns
  0

• error in breadth_and_depth_output function from metapop_filter.py

  #26 opened 2 years ago by beacamara
  1

• Error while Calculating and Visualizing Microdiversity using MetaPop

  #28 opened a year ago by 1endless
  0

• About Mamba

  #27 opened a year ago by ewars
  0

• Help: difference between local and global SNP calls

  #17 opened 2 years ago by hdore
  1

• FileNotFoundError at the FST step

  #19 opened 2 years ago by MalickNdiye
  4

• Help: "the file did not appear to be a SAM or BAM format file"

  #18 opened 2 years ago by Danrui-Wang
  4

• local variable 'contig' referenced before assignment

  #25 opened 2 years ago by wwood
  7

• Macrodiversity Error: NAs produced by integer overflow

  #23 opened 2 years ago by DanielSprockett
  1

• Installation problem

  #21 opened 2 years ago by ShailNair
  1

• multiprocessing bug only for python 3.8 or later

  #20 opened 2 years ago by jianshu93
  0

• R figure issue

  #15 opened 3 years ago by ChaoLab
  1

• Output docs + pN/pS ratio

  #16 opened 2 years ago by PegahDan
  1

• 06.SNP_counts step running for an abnormally long time

  #13 opened 3 years ago by ChaoLab
  34

• Is it required to filter the bam files?

  #14 opened 3 years ago by ChaoLab
  4

• Can metapop increase its mapping criteria to solve strain-level community marcro-/micro-diversity?

  #12 opened 3 years ago by ChaoLab
  1

• ValueError: invalid literal for int() with base 10

  #11 opened 3 years ago by liupfskygre
  4

• MetaPop can not be used on Cyverse

  #10 opened 3 years ago by ZhengXiaoxuan11542
  3

• error for macrodiversity

  #3 opened 4 years ago by Thexiyang
  10

• Initial conda step gets stuck on solving the environment unless you install them individually

  #9 opened 4 years ago by michaelamann
  0

• Files issue

  #8 opened 4 years ago by ebustos128
  2

• depth_by_pos.tsv is empty

  #1 opened 4 years ago by RyanCook94
  1

• possible typo in the code and readme

  #2 opened 4 years ago by Thexiyang
  1

• Error in micro diversity visualization

  #5 opened 4 years ago by ZongzhiWu
  2

• Error in fixation index step

  #6 opened 4 years ago by susheelbhanu
  1

• Autism dataset running example

  #7 opened 4 years ago by hh1985
  1

• Some errors in rbindlist

  #4 opened 4 years ago by ZongzhiWu
  1