Pinned Repositories
30DayMapChallenge
🌍 My contributions to the #30DayMapChallenge 2019
AACCUniv2019_IntroR
Course materials for 2019 AACC University session: Getting Started with R for Laboratory Medicine
Adjutant
Runs a pubmed query, returns results and allows user to explore high-level structure of returned documents
Age-associated_cancer_genome
aging-phenome
aRt
Generative or data-driven artwork made with R
art-from-code
aRtist
Making art with R
hdp
R pkg for Hierarchical Dirichlet Process
metabdel's Repositories
metabdel/Adjutant
Runs a pubmed query, returns results and allows user to explore high-level structure of returned documents
metabdel/awesome-creative-coding
Creative Coding: Generative Art, Data visualization, Interaction Design, Resources.
metabdel/customized_upset_plots
Make customized upset plots: from raw data to plots
metabdel/DDIEM
DDIEM
metabdel/diversity_innovation_paradox
metabdel/GeneBridge
Integrative systems analysis identifying the associations between genes and biological process or modules.
metabdel/GenoPheno-CatalogShiny
Shiny app for geno-pheno catalog
metabdel/gnomad_lof
metabdel/HCA_Benchmarking
This repository contains HCA Benchmarking codes
metabdel/HUSHDataAnalysis
source code for data analysis of UNC HUSH+ dataset on asthma patients
metabdel/libcdio
Fork of libcdio explicitly for Kodi on win64
metabdel/loinc2hpo
Java library to map LOINC-encoded test results to Human Phenotype Ontology
metabdel/MusaMasterclass
My masterclass hosted by the Penn MUSA department on 3D mapping and visualization in R
metabdel/nbs_facility_qa
A project for generating QA reports for facilities that send newborn screening samples
metabdel/neonatal-gut-colonization
Analysis source code for "Bacterial colonization reprograms the neonatal gut metabolome"
metabdel/netDx
R package with netDx software and data for examples
metabdel/OmicsLonDA
Longitudinal analysis of OMICS features
metabdel/Orphadata.org
The mission of Orphadata is to provide the scientific community with a comprehensive, high-quality and freely-accessible dataset related to rare diseases and orphan drugs, in a reusable format. The dataset is a partial extraction of the data stored in Orphanet, which is also accessible at www.orpha.net for consultation purposes only. This freely-accessible dataset is available in seven languages (English, French, German, Italian, Portuguese, Spanish and Dutch). The inventory of rare disorders is also available in Polish and Czech.
metabdel/phd2020
PhD Course 2020 Systems Biology of Human Metabolism and Gut Microbiome (3 ECTS)
metabdel/phuse-scripts
Delivery standard industry analyses, built upon CDISC standards for analysis data
metabdel/RdeeplearningNN-bioage
metabdel/reproducible_template
metabdel/snorkeling
Extracting biomedical relationships from literature with Snorkel 🏊
metabdel/tidygraph-oncotree
A tidygraph of the MSK OncoTree
metabdel/tidymetrics
Dimensional modeling done the tidy way!
metabdel/tidytuesday-1
Official repo for the #tidytuesday project
metabdel/TidyTuesday-2
📊 My contributions to the #TidyTuesday challenge
metabdel/tidytuesdayR
Extract weekly TidyTuesday Data/Readme
metabdel/tidytuesdays
Entries for tidytuesday
metabdel/vibe-suppl
Variant Interpretation using Biological Evidence - supplemental files