Pinned Repositories
30DayMapChallenge
🌍 My contributions to the #30DayMapChallenge 2019
AACCUniv2019_IntroR
Course materials for 2019 AACC University session: Getting Started with R for Laboratory Medicine
Adjutant
Runs a pubmed query, returns results and allows user to explore high-level structure of returned documents
Age-associated_cancer_genome
aging-phenome
aRt
Generative or data-driven artwork made with R
art-from-code
aRtist
Making art with R
hdp
R pkg for Hierarchical Dirichlet Process
metabdel's Repositories
metabdel/ASD-ML-EURPSY
Code for Identification of newborns at risk for autism using electronic medical records and machine learning; EURPSY-D-19-00458R1
metabdel/autism_precision_medicine
metabdel/awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
metabdel/awesome-R
A curated list of awesome R packages, frameworks and software.
metabdel/BioBombe
BioBombe: Sequentially compressed gene expression features enhances biological signatures
metabdel/CKG
Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph
metabdel/COVID-19
Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE
metabdel/covid-19-data
Data on COVID-19 maintained by Our World in Data
metabdel/COVID-20
metabdel/CSBB-Shiny
Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis
metabdel/CVDSBA
The project data analysis code
metabdel/data-screencasts
Code from live exploratory analyses of data in R
metabdel/ggplot2_workshop
Material for "Drawing Anything with ggplot2" workshop
metabdel/ggupset
Combination matrix axis for 'ggplot2' to create 'UpSet' plots
metabdel/HPAanalyze
A Bioconductor package to retrieve and analyze data from the Human Protein Atlas
metabdel/HuRI_paper
Code for the analyses in the human reference interactome paper.
metabdel/INfORM
A new tool for Inference of NetwOrk Response Modules
metabdel/mapdeck
R interface to Deck.gl and Mapbox
metabdel/MassSpec-Coronavirus-Project-Docs
Coronavirus Mass Spec Analysis Page
metabdel/mastering-shiny
Mastering Shiny: a book
metabdel/mathart
Create mathematical art with R
metabdel/MetaMEx
Transcriptomics meta-analysis of skeletal muscle response to exercise
metabdel/ML_course_2020_maastricht
Machin Learning Introductory Course
metabdel/MultiPower
metabdel/NBSeq1200paper
metabdel/scib
Benchmarking analysis of data integration tools
metabdel/scRNA_disease
Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1
metabdel/shinymetrics
Shiny modules for visualizing tidy metrics
metabdel/tidycells
Automatic transformation of untidy spreadsheet-like data into tidy form
metabdel/vargen
VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a list of tissues / gwas traits of interest to complete the results. You can also use your own customised list of genes. VarGen is capable of annotating the variants to help you identify the most impactful ones.