metagenome-atlas/atlas

Error in rule download_gtdb

Closed this issue · 1 comments

  • I checked and didn't found a related issue,e.g. while typing the title
  • [x ] ** I got an error in the following rule(s):** download_gtdb
  • [ x] I checked the log files indicated indicated in the error message (and the cluster logs if submitted to a cluster)

Here is the relevant log output:

--2023-06-28 20:09:31--  https://data.gtdb.ecogenomic.org/releases/release214/214.0/auxillary_files/gtdbtk_r214_data.tar.gz
Resolving data.gtdb.ecogenomic.org (data.gtdb.ecogenomic.org)... 203.101.230.53
Connecting to data.gtdb.ecogenomic.org (data.gtdb.ecogenomic.org)|203.101.230.53|:443... connected.
ERROR: cannot verify data.gtdb.ecogenomic.org's certificate, issued by ‘/C=US/O=Let's Encrypt/CN=R3’:
  Issued certificate has expired.
To connect to data.gtdb.ecogenomic.org insecurely, use `--no-check-certificate'.



** Atlas version**
2.17
Additional context
Adding --no-check-certificate resolves the issue.

SilasK commented

Fixed by your PR #674