metagenome-atlas/atlas

Issues

• Error in rule rename_genomes and dram_download

  #547 opened 2 years ago
  11

• How to rerun after changing parameters

  #546 opened 2 years ago
  3

• Error in rule error_correction

  #545 opened 2 years ago
  3

• Mamba installation Problem

  #544 opened 2 years ago
  4

• Incomplete documentation missing human genome link

  #542 opened 2 years ago
  2

• Error in rule build_qc_report:

  #541 opened 2 years ago
  12

• Error in rule classify

  #540 opened 2 years ago
  3

• Upgrading to CheckM2

  #539 opened 2 years ago
  4

• Error in rule identify

  #538 opened 2 years ago
  5

• Error with spades when installing remote packages

  #537 opened 2 years ago
  6

• `atlas init-public`doesn't work.

  #535 opened a year ago
  2

• Speed up DRAM annotations

  #533 opened 2 years ago
  2

• "Nothing provides requested Spades"

  #532 opened 2 years ago
  0

• Error in rule run_megahit

  #531 opened 2 years ago
  2

• Error in rule root_tree from gtdbtk

  #530 opened 2 years ago
  4

• Error in rule convert_sam_to_bam

  #529 opened 3 years ago
  6

• Advice on memory allocation

  #528 opened 3 years ago
  2

• Error in rule DRAM_annotate

  #527 opened 2 years ago
  8

• Error in rule run_checkm_lineage_wf. UPDATE

  #526 opened 2 years ago
  1

• Error in rule run_checkm_lineage_wf

  #525 opened 3 years ago
  6

• how to activate SemiBin

  #521 opened 2 years ago
  4

• Insufficient memory for the Java Runtime Environment to continue

  #519 opened 3 years ago
  2

• Question: restarting after pipeline interrupted

  #517 opened 3 years ago
  2

• Invalid maximum heap size: -Xmx0G

  #516 opened 3 years ago
  1

• Error in rule combine_gene_coverages: not enough memory for large datasets

  #515 opened 2 years ago
  2

• Error in "binning.smk" and snakemake "returned non-zero exit status 1"

  #513 opened 2 years ago
  4

• Error in rule align

  #511 opened 3 years ago
  1

• Error in rule concat_annotations: cannot open ‘genomes/annotations/dram/intermediate_files/MAG45/annotations.tsv’ for reading: No such file or directory

  #510 opened 3 years ago
  2

• Error in gtdb download

  #509 opened 3 years ago
  4

• Error in rule build_bin_report

  #508 opened 2 years ago
  2

• Error in rule run_dram

  #506 opened 2 years ago
  20

• Error in rule maxbin: can't find Bowtie2 even if it is in $PATH?

  #505 opened 3 years ago
  1

• Error in rule initialize_qc: reformat.sh running with -Xmx0G

  #504 opened 3 years ago
  6

• DAS_Tool v1.1.4 with new output file names

  #503 opened 3 years ago
  0

• Error in config file for metatranscriptome

  #501 opened 2 years ago
  3

• Error in rule maxbin, syntax errors on rerunning

  #499 opened 3 years ago
  3

• Error in rule run_das_tool - "there is no package called 'doMC'"

  #496 opened 3 years ago
  6

• Forcing ATLAS to not run SPAdes jobs in parallel

  #494 opened 3 years ago
  2

• Host sequences removal

  #493 opened 2 years ago
  4

• Postprocess memory and thread usage report

  #488 opened 2 years ago
  4

• DRAM --min_contig_size

  #487 opened 3 years ago
  2

• Error in rule

  #486 opened 3 years ago
  1

• MissingOutputException

  #485 opened 3 years ago
  0

• Lock Error

  #484 opened 3 years ago
  1

• Error in rule combine_gene_coverages

  #483 opened 3 years ago
  4

• dRep doesn't follow completeness and contamination thresholds

  #482 opened 3 years ago
  11

• DRAM_annotate fails at pfam step

  #481 opened 3 years ago
  3

• Blocked at "Downloading and installing remote packages."

  #479 opened 3 years ago
  12

• gtdb certificate has expired

  #478 opened 3 years ago
  9

• No module named 'snakemake'

  #477 opened 2 years ago
  5