mhemberg

mhemberg's Stars

• Caochris/SCOTIA

  Language:Jupyter Notebook53

• wheaton5/souporcell

  Clustering scRNAseq by genotypes

  Language:Python15144

• SAND-Lab/MEA-NAP

  MEA-NAP. A streamlined diagnostic and analytic tool for data obtained using microelectrode arrays.

  Language:MATLAB126

• netbiolab/scHumanNet

  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3

  Language:C++377

• JunhaCha/scHumanNet

  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3

  Language:C++1

• sc-eQTLgen-consortium/WG1-pipeline-QC

  Part of the sc-eQTLgen consortium pipeline. Step 1, where the QC is done.

  Language:Python76

• hemberg-lab/sc3s

  Single Cell Consensus Clustering with Speed

  Language:Python196

• JuliaLang/julia

  The Julia Programming Language

  Language:Julia45k5.4k

• DerKevinRiehl/transposition_detector_deTEct

  Transposition event detection tool using NGS alignment data and SV calling outputs (VCF files) from PBSV or Sniffles

  Language:Python7

• DerKevinRiehl/transposon_annotation_reasonaTE

  Transposon annotation tool "resonaTE" (part of TransposonUltimate)

  Language:Python161

• DerKevinRiehl/transposon_classifier_rfsb

  Transposon classification tools RFSB, part of TransposonUltimate

  Language:Python133

• DerKevinRiehl/transposon_annotation_tools

  A set of bioconda packages for transposon annotations. During my masterthesis I downloaded lots of these tools and I want to make it easier for people to install and run these softwares.

  Language:Perl107

• DerKevinRiehl/TransposonUltimate

  TransposonUltimate - a holistic set of tools for transposon identification

  745