microsoft/evodiff

Issues

• How can I fine-tune the models with my sequences or MSAs?

  #55 opened 23 days ago by JiangLab2020
  0

• Question about fine-tuning

  #18 opened a year ago by PodevynLoris
  1

• Increasing sequence similarity to input sequences

  #54 opened 23 days ago by diossynvax
  0

• The python version does not correspond to the version of the package required in evodiff

  #50 opened 2 months ago by YusenZheng
  2

• conditional_generation inpaint import error

  #47 opened 2 months ago by ranaabarghout
  2

• Biotite v1.0.0 breaks conditional diffusion functions.

  #51 opened 2 months ago by colbyford
  1

• Question about generating IDRs from EvoDiff-Seq

  #48 opened 2 months ago by zhang-bo-lilly
  3

• Using a novel config file in EvoDiff-MSA

  #49 opened 2 months ago by diossynvax
  2

• Question not Issue

  #46 opened 2 months ago by marjanUofT
  2

• UserWarning: Attempted to get default timeout for nccl backend, but NCCL support is not compiled

  #43 opened 3 months ago by maggiedev2024
  0

• Dependency issues when installing environment packages

  #42 opened 3 months ago by gadmiraal
  0

• KeyError: '!' during conditional generation

  #17 opened 3 months ago by cmwilson252
  5

• Running the `evodiff/generate.py` script

  #30 opened 3 months ago by Amelie-Schreiber
  1

• Nothing works

  #36 opened 3 months ago by ChenchaoZhao
  4

• Question: ways to improve conditional MSA generation

  #33 opened 3 months ago by yzhang-github-pub
  1

• Non-canonical amino acid sequence seen

  #37 opened 6 months ago by sungyounjoo
  1

• msa_oa_ar_maxsub not recognized

  #31 opened a year ago by jasonkyuyim
  2

• tag device='cuda' not working

  #9 opened 3 months ago by arjunsbalaji
  4

• Error with IDR inpainting with Evodiff-MSA

  #27 opened 3 months ago by ZhiYeG
  1

• Error while running inpainting task using EvoDiff-seq

  #38 opened 3 months ago by aksingh135
  1

• Scaffolding benchmark produces different sequences every time it is run

  #39 opened 3 months ago by abhi-senthilkumar
  1

• TypeError: forward() missing 1 required positional argument: 'y'

  #11 opened 6 months ago by jsteward2930
  2

• padding_idx=masking_idx in ByteNetLMTime instantiation arguments

  #32 opened 7 months ago by cmarkak
  1

• How to train LRAR

  #34 opened 8 months ago by violet-sto
  0

• Following basic code doesn't work

  #35 opened 8 months ago by dannyoo
  1

• Using generate_msa()

  #19 opened a year ago by mcale6
  3

• the error in generate sequences using esm1b_650M

  #29 opened a year ago by Linzy19
  2

• Question on MaxHamming distance

  #28 opened a year ago by BSharmi
  1

• Missing data files: lengths_and_offsets.npz, consensus.fasta, and splits.json

  #10 opened a year ago by Linzy19
  3

• Error Loading State Dictionary in ByteNetLMTime: Unexpected Keys

  #25 opened a year ago by PodevynLoris
  6

• Allow diffusion to gap character in OADM models?

  #22 opened a year ago by elibixby
  1

• Indexing bugs in TRRMSADataset

  #23 opened a year ago by JonathanDZiegler
  0

• Error Loading Pretrained Model with `--pretrained` Flag

  #21 opened a year ago by PodevynLoris
  0

• Inpaint VS Scaffold

  #14 opened a year ago by PodevynLoris
  1

• Missing uniref50_aa_ref_test.csv

  #12 opened a year ago by andrew0901
  2

• no generate directory

  #8 opened a year ago by arjunsbalaji
  1

• Action required: self-attest your goal for this repository

  #1 opened a year ago by microsoft-github-policy-service
  6