PDB codes for structures in `Epitope` PDB_Jespersen
a-r-j opened this issue · 1 comments
a-r-j commented
Hiya!
I'm looking for a (hopefully!) easy way to get the PDB codes for each of the examples in the PDB_Jespersen
Epitope prediction dataset.
kexinhuang12345 commented
Hey Arian, sorry for the late reply. Seems like i stop receiving notifications from the repo issues. Here is the link to download the raw dataset: https://services.healthtech.dtu.dk/services/BepiPred-2.0/pdb_chains.fasta It should be super easy to parse the PDB ID from it:
>1A2Y_BA C 2
kvfgrcelaaamkrhglaNyrGYSlgNwvcaakfesnfntqatnrntdgstdygilqinsrwwcndgrtpgsrnlcnipcsallssditasvncakkivsdGNgmnawvawrnrcKGTDVQawIRgcrl
We will also add a function to grab the PDB ID for this dataset in the next release!