miwipe/ngsLCA

Issues

• ngsLCA.cpp:60: void mod_db(int*, int*, int2int&, int2char&, int2char&): Assertion `parent.count(out[i])==1' failed

  #32 opened 3 months ago by itpcas-zcb
  0

• ngsLCA with bwa output

  #31 opened a year ago by tothuhien
  2

• install ERROR

  #29 opened 2 years ago by guoyuh
  3

• problems running the test data

  #30 opened 2 years ago by slennart
  2

• Kaiju output file style

  #27 opened 2 years ago by miwipe
  0

• Segmentation fault (core dumped)

  #22 opened 3 years ago by maxibor
  13

• check input file is sorted by readname

  #25 opened 2 years ago by ANGSD
  1

• Kaiju output file style

  #26 opened 2 years ago by miwipe
  0

• Taxa rank otu tables

  #24 opened 2 years ago by valentinavan
  7

• output description

  #18 opened 3 years ago by miwipe
  0

• output plots

  #19 opened 3 years ago by miwipe
  1

• Compilation error on macOS 11.6

  #21 opened 3 years ago by maxibor
  0

• filtering of best matches reads only

  #11 opened 5 years ago by ANGSD
  0

• parse fasta for recalculation of edit distance

  #2 opened 5 years ago by ANGSD
  0

• make script that parses to krona and to megan

  #10 opened 5 years ago by ANGSD
  0

• rm wLCA output

  #12 opened 5 years ago by miwipe
  0

• should .log be removed?

  #16 opened 5 years ago by ANGSD
  1

• allow for intervals of edit distance and similarity score

  #7 opened 7 years ago by ANGSD
  1

• output print accession number and query sequence length

  #5 opened 7 years ago by miwipe
  2

• check bam flags for the discard of unmapped and low quality reads

  #3 opened 7 years ago by ANGSD
  1

• add raw sequence to output

  #8 opened 7 years ago by ANGSD
  1

• extract results above species level

  #9 opened 7 years ago by ANGSD
  1

• query sequences

  #1 opened 7 years ago by miwipe
  1

• Error in MN:i: parsing sequences with MN:i:1 and above have been parsed?

  #6 opened 7 years ago by miwipe
  1

• make option for input filenames

  #4 opened 7 years ago by miwipe
  1