Pinned Repositories
awesome-rna-3D-tools
awesome tools for RNA
emacs-grammarly
an Emacs extension to send a text to/from Grammarly
emacs-pdb-mode
pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files. XEmacs and/or GNU Emacs are available for most computing platforms.
EmacsOrgModeClockingXBar
see what you are working on with XBar, Conky ;-) [if using emacs/orgmode/clocking] + alternatives
EvoClustRNA
RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io
geekbook
G33KB00K3 - fun to read & fun to write -- 🤓 eXtreme eXtendable note taking system for nerds/geeks (including scientists!) docs: http://geekbook.rtfd.io = beautiful html generator of your markdown-based notes
orgmode-capture-all
Capture ALL (with a right click) to OrgMode Inbox
Pocket-Plus-Calibre-Plugin
📚 Modified version of the Calibre plugin for Pocket. Now, you get your articles organized by your Pocket tags, and more!
pubmex
get full paper names for downloaded publications automatically
rna-tools
🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
mmagnus's Repositories
mmagnus/emacs-grammarly
an Emacs extension to send a text to/from Grammarly
mmagnus/garmin2orgmode
garmin2orgmode - Send your Garmin activities to OrgMode (on macOS)
mmagnus/OrgModeClocking2Calendar
one way synchronization of your clocking (time tracking) entries from OrgMode Emacs
mmagnus/rna-tools-webserver-engine
The light-weight, complete webserver engine used by me for servers: RNA/DNA-protein docking method http://genesilico.pl/NPDock, RNA 3D structure prediction method http://iimcb.genesilico.pl/SimRNAweb/, RNA 3D quality control, http://iimcb.genesilico.pl/mqapRNA/, building RNA models from recurrent 3D motifs http://genesilico.pl/rnamasonry
mmagnus/do-science-covid-faq
mmagnus/h2o_utils
🔧 H2o utils: save/load models to your H2O session
mmagnus/emacs-toggl
a simple plugin to work with toggl
mmagnus/scanify
Scanify (and resize if needed) your pictures/screenshots
mmagnus/Xfind
🔎 a command tool for searching on your eXternal machines (VM etc) and drives
mmagnus/garmin2calendar
garmin2calendar - Send your Garmin activities to Calendar (on macOS)
mmagnus/geekbook-export
mmagnus/centralized-workflow-exercise
mmagnus/DesiRNA
RNA sequence design software
mmagnus/doctest-cmds
doctesting for cmds in Python doctests
mmagnus/flycheck-grammarly
Grammarly support for Flycheck.
mmagnus/h2o-3
Open Source Fast Scalable Machine Learning API For Smarter Applications (Deep Learning, Gradient Boosting, Random Forest, Generalized Linear Modeling (Logistic Regression, Elastic Net), K-Means, PCA, Stacked Ensembles...)
mmagnus/markdown-notes-style-flychecker
Debug your notes (in Markdown) on the fly with GNU Emacs http://www.flycheck.org
mmagnus/mini-moderna3
A program for comparative RNA modeling [mini-moderna, to be able to use it with rna-tools for mutating functionality in Python3]
mmagnus/proteinfeatureview
The Protein Feature View - a SVG library for visualising protein annotations
mmagnus/PyMOL4RNA
A PyMOL plugin for structural bioinformatics
mmagnus/QoRTs
Quality of RNA-Seq Toolset
mmagnus/recipe
Guacamole recipe exercise
mmagnus/RNA-Puzzles-dataset
This repository includes all the submitted RNA structures in RNA-Puzzles.
mmagnus/rossmann-toolbox
mmagnus/rsRNASP
rsRNASP: A distance-dependent statistical potential based on residue separation for RNA 3D structure evaluation.
mmagnus/scanify-1
A command line for transforming camera-taken photos into scanned ones.
mmagnus/sort-markdown-footnotes
Sorting Markdown footnote markers into their order of appearance in the text.
mmagnus/statannot
add statistical annotations (pvalue significance) on an existing boxplot generated by seaborn boxplot
mmagnus/toggl_target
I keep on track of my monthly goals of working and learning hours
mmagnus/toolkit-ansible-role
Ansible role for RNA-Puzzles Toolkit. Contains ansible-container config and an example playbook