mnsmar

National Institutes of Health

Pinned Repositories

tabletools
Miscellaneous scripts for manipulating table files
Language:Python0 5 05
biogo
biogo is a bioinformatics library for Go
Language:Go00
clipseqtools
A suite for the analysis of CLIP-Seq datasets.
Language:Perl12 4 83
coursera_bio_algorithms_part_1
The programming assignments for Coursera course "Bioinformatics Algorithms (Part 1)"
Language:Python5 5 04
GenOO
A Modern Perl Framework for High Throughput Sequencing analysis
Language:Perl2 3 00
htsdb
Libary and tools to handle High Throughput Sequencing data stored in SQLite
Language:Go0 2 10
perl-mybio
Perl library primarily for analyzing deep sequencing data
Language:Perl11
ribothrypsis
Key tools for Ribothrypsis analysis
Language:Go0 3 01
rnadna
Convert sequence representation RNA - DNA for FASTA/Q
Language:Go11
samToBed
Convert a SAM file to a BED file
Language:Perl10

mnsmar's Repositories

mnsmar/clipseqtools
A suite for the analysis of CLIP-Seq datasets.
Language:Perl12 4 83
mnsmar/GenOO
A Modern Perl Framework for High Throughput Sequencing analysis
Language:Perl2 3 00
mnsmar/rnadna
Convert sequence representation RNA - DNA for FASTA/Q
Language:Go11
mnsmar/biogo
biogo is a bioinformatics library for Go
Language:Go00
mnsmar/htsdb
Libary and tools to handle High Throughput Sequencing data stored in SQLite
Language:Go0 2 10
mnsmar/ribothrypsis
Key tools for Ribothrypsis analysis
Language:Go0 3 01
mnsmar/bioutils
Standalone utility scripts for bioinformatics
Language:Perl1 0
mnsmar/CLIP-chimaeric
Scripts used for CLIP chimaeric analysis
Language:Perl
mnsmar/dotgit
Configuration files for git
mnsmar/dottmux
tmux configuration files
mnsmar/fasta
Convenient handling of FASTA-encoded files for the Go language
Language:Go
mnsmar/fastautils
Standalone utility scripts for manipulating FASTA files
Language:Perl1 0
mnsmar/fastq-trim
Trim Fastq read sequences from the 5' or 3' end
Language:Perl2 0
mnsmar/fastqutils
Standalone utility scripts for manipulating FASTQ files
Language:Perl
mnsmar/go-arg
Struct-based argument parsing in Go
Language:Go
mnsmar/goenv
You know, rbenv but for go.
Language:Shell2 0
mnsmar/itutils
Standalone utility scripts for common IT tasks
Language:Shell1 0
mnsmar/lendistro
Length distribution for records in common bioinformatics files
Language:Go
mnsmar/m6anet
Detection of m6A from direct RNA-Seq data
Language:Python
mnsmar/mnsmar.github.io
My personal website
Language:JavaScript2 0
mnsmar/molokai
Molokai color scheme for Vim
Language:Vim script1 0
mnsmar/nihsummer2021
I worked on
1 0
mnsmar/nvimrc
Configuration files for neovim
Language:Vim Script2 0
mnsmar/samql
[LEGACY: Development has moved to maragkakislab/samql] SQL-like query language for the SAM/BAM file format
Language:Go
mnsmar/samutils
Standalone utility scripts for manipulating SAM files
Language:Perl
mnsmar/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
Language:HTML
mnsmar/sra-to-sample
Simple script to download and organize SRA files to samples
Language:Python2 0
mnsmar/tabletools
Miscellaneous scripts for manipulating table files
Language:Perl1 0
mnsmar/tcomment_vim
An extensible & universal comment vim-plugin that also handles embedded filetypes
Language:Vim Script1 0
mnsmar/wig
a simple Go library providing functionality for a slice of integers
Language:Go2 0