monarch-initiative/monarch-ontology

Issues

• Retire this repo and replace with new PhenIO.owl

  #40 opened 3 years ago by cmungall
  3

• parsing monarch ontology with fastobo fails

  #39 opened 3 years ago by sierra-moxon
  4

• Add FYECO to Monarch Ontology

  #38 opened 3 years ago by matentzn
  0

• Old build script

  #37 opened 3 years ago by matentzn
  0

• Cannot use ROBOT Relax in pipeline

  #36 opened 3 years ago by matentzn
  0

• Latest ontology load contains reflexive subclass of edges

  #35 opened 3 years ago by kshefchek
  1

• Urgent unsat blocking pipeline

  #33 opened 3 years ago by matentzn
  1

• Remove gene labels from MP

  #26 opened 5 years ago by kshefchek
  7

• SubClassOf cycles in 201907 build

  #21 opened 5 years ago by kshefchek
  34

• Derive ontology list from Toms namespace overview

  #29 opened 5 years ago by matentzn
  0

• Monarch Ontology Review

  #28 opened 5 years ago by matentzn
  2

• Investigate weird UBERON classes in the nifstd namespace.

  #27 opened 5 years ago by matentzn
  7

• OBO generation fails with ERROR

  #25 opened 5 years ago by matentzn
  0

• Monarch OWL resource consumption

  #23 opened 5 years ago by matentzn
  5

• JSON generation fails with ERROR

  #24 opened 5 years ago by matentzn
  0

• Move monarch owl pipeline to ODK

  #18 opened 6 years ago by kshefchek
  4

• Add license

  #17 opened 5 years ago by matentzn
  4

• Imports mammal.owl

  #6 opened 5 years ago by drseb
  0

• Remove stale labels, defs, etc from hard importing ontologies

  #19 opened 6 years ago by kshefchek
  2

• BFO entity-continuant-thing incorrect equivalence

  #16 opened 6 years ago by kshefchek
  13

• QC: Add check that any imported ontology is non-empty

  #14 opened 6 years ago by matentzn
  1

• load only raw/atomic versions of ontologies in monarch import chain

  #13 opened 6 years ago by cmungall
  1

• Implement QC pipeline for monarch.owl

  #11 opened 7 years ago by cmungall
  2

• can't load monarch.owl in owltools because of temp ontology names

  #10 opened 7 years ago by selewis
  0

• Add chiro (axiomatization of chebi roles) to import chain

  #8 opened 8 years ago by cmungall
  0

• ObjectProperty Label collisions

  #7 opened 8 years ago by TomConlin
  2

• add some missing species in taxon slim

  #5 opened 9 years ago by nlwashington
  0

• additional imports for monarch.owl

  #4 opened 9 years ago by nlwashington
  1

• Fix OCLC entry

  #3 opened 9 years ago by cmungall
  1

• CLO imports of BFO_importer is broken

  #2 opened 9 years ago by nlwashington
  0

• add VT (and PT?)

  #1 opened 9 years ago by nlwashington
  0