drseb
Information architect and algorithm development at Ada Health, Monarch Initiative. Co-Founder of Human Phenotype Ontology
@adahealthBerlin, Germany
Pinned Repositories
annotation-simulation
Code to generate ontology annotated objects (e.g. HPO annotated patients)
boqa
Bayesian ontology querying from Bauer et al.
HPO-archive
HPO archive of the ontology and annotations
HPO-translations
Internationalisation of the HPO content
hpoweb
HPO web browser created with Vaadin
obo2xls
Conversion tool for obo ontologies to xls
phenopacket-schema
Repository for the GA4GH inlined phenopacket schema
phenopposites
Project to generate phenotype opposite_of relationships and investigate the effect on ontology-based algorithms
human-phenotype-ontology
Ontology for the description of human clinical features
upheno
The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
drseb's Repositories
drseb/HPO-translations
Internationalisation of the HPO content
drseb/HPO-archive
HPO archive of the ontology and annotations
drseb/boqa
Bayesian ontology querying from Bauer et al.
drseb/phenopposites
Project to generate phenotype opposite_of relationships and investigate the effect on ontology-based algorithms
drseb/annotation-simulation
Code to generate ontology annotated objects (e.g. HPO annotated patients)
drseb/phenopacket-schema
Repository for the GA4GH inlined phenopacket schema
drseb/hpoweb
HPO web browser created with Vaadin
drseb/negation-ontology
drseb/obo2xls
Conversion tool for obo ontologies to xls
drseb/cpn
causal phenotype networks
drseb/drseb.github.io
Website for Sebastian
drseb/hpo-db-version
Tool to generate the mysql-db-version
drseb/hpo-obo-qc
The QC software for the OBO version of HPO
drseb/hpo-owl-qc
The QC software for the OWL version of HPO (only text-checks, not so much logic included)
drseb/OBOFoundry.github.io
OBO Foundry Ontology Registry
drseb/ontodiff
OboDiff with Excel-Output
drseb/purl.obolibrary.org
A new system for managing OBO PURLs
drseb/zebrafish-phenotype-ontology