MD tags for realigned reads

Question

MD tags for realigned reads

rawagiha opened this issue 5 years ago · 4 comments

I am using abra2.2.19. Thanks a lot for this great tool.

Is it possible to update MD tags of realigned reads?
They are using the tags based on the original alignments.
Also, some realigned reads do not have MD at all.

Thanks,

Answer 1 · 2019-04-01T20:59:43.000Z

Yes, we will look into addressing this in an upcoming release.

Answer 2 · 2019-04-01T21:14:53.000Z

Thank you so much for your consideration!

Answer 3 · 2019-10-08T17:11:21.000Z

Hi, I am finally looping back to this and seeing that the MD format is not so straightforward and difficult to use. Is supporting for this still of interest?

Answer 4 · 2019-10-08T17:24:50.000Z

Thanks again for caring about this issue. For now, I can use the realigned reads with the MD feature.