v2.08 crash
Closed this issue · 8 comments
I tried the 2.08 version, and it crashed. Here's log:
ERROR Thu Aug 24 21:46:29 CST 2017 Error parsing assembled contigs. Line: [>chr4_49108801_49109201_1]
Contigs: [
chr4_49108801_49109201_0_-2.495560
ATTCCATTTCATTCCACTGGTGTTTATTCCATTCCACACCATTAAATTCCATTCCATTCTATTCCATTCGGGTTTATTCCAATTCATTCCATTCCATTCCATTCCATTCCATTCGGGTTTCATTCCATTCCACATTCCATTCCGTGTTGATTCCATTCCATTCCATTCCATTCCATTCCACTCCATTCCAATCCATTACATTCCACTCGGGTTGAATCCTTTCCATTCCATTCCAGTGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCCATTCCATTCCACTCGGGTTGTTCCATTCCATTCCATTCCTTTCCATTCCATTCCATTCCGTTCCACTCGGCTTGA
chr4_49108801_49109201_1_-3.251221
ATTCCATTTCATTCCACTGGTGTTTATTCCATTCCACACCATTAAATTCCATTCCATTCTATTCCATTCGGGTTTATTCCAATTCATTCCATTCCATTCCATTCCATTCCATTCGGGTTTCATTCCATTCCATCAATCAAµ�ATTACATTCCACTCGGGTTTCCTTTCCATTCCATTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTCCGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGTGTTGATTCCATTGAATTCCATCCCATTCCATTCCATTCCATTCTATTGCATTCCATTCTATTCCATTCCACTCGTGTTGATTCCCTTCCATTCCATTCCATTCCATTCCACTTGGGTTGATTCCATTCCGTTCCTTTCCATTGCTTTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCGTTCC
chr4_49108801_49109201_2_-1.858778
TCCATTCCATTCCATTCCATTCCATTCGGGTTT¸õ_�TTTGTGTTGAATCCTTTCCATTCCTTTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCCATTCCATACCGTTCTGTTCCACTCCGTTCCATTGCATTCCATACCATTCTATTCCACGCGGGTTGATTCCATTGTATTCCATTCCATTCCATTCTATTGCATTCCATTCCATTCCATTCCACCA
chr4_49108801_49109201_3_-2.588145
TCCATTCCATTCCATTCCATTCCATTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCCATTCCATTCCATTCCATTCCTTTCCATTTGTGTTGATTCCATTCCATTCCAATCCATTCCATTTCATTCCACTCCATTCCAATCCATTACATTCCACCTGGGTTGAATCCTTTCCATTC
chr4_49108801_49109201_4_-3.234833
TCCATTCATTCCATTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTGCATTCCATTCCATTCCATTTGTGTTGATTCCATTCCATTGCATTCCATTCCATTCCACTCCATTCCAATCCATTACATTCCACTCGGGTTGAATCTTTTCCATTCCATTCCAATGCCTTCCCTTCCATTCAATTCCACTCGGATTCAGTCAATTCCATTCTATTCCATTCCATTACATTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGGGTT
chr4_49108801_49109201_5_-2.855427
TCCATTCATTCCATTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTGCATTCATTCCTTTCCATTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCGATTGCATTCCATTCCTTTCCAATTCAATCTATTCCATTCCATTCCATTCCGTTCTGTTCCACTCCATTCCATTGCATTCCGTACCATTCCATTCCACTCGGGTTGATTCCATTGAATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTC
chr4_49108801_49109201_6_-2.855427
TCCATTCATTCCATTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTGCATTCATTCCTTTCCATTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCGATTGCATTCCATTCCTTTCCATTCTATTCCATTCCGTTCCATTCCATTCCATTTGTGTTGATTCCATT
chr4_49108801_49109201_7_-2.980366
TCCATTCATTCCATTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTGCATTCATTCCTTTCCATTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCGATTGCATTCCATTCCTTTCCATTCTATTCCATTCCGTTCCATTCCATTCCATTTGTGTTGATTCCATTTGCATTCCATTCCATTCCACTCCATTCCAATCCATTACATTCCACTCGGGTTGAATCCTTTCCATTCCTTTGCAATGCATTCCCTTCCATTCAATTCCACTCGAATTCAATCTATTCCATTCCATTCCATTCCGTTCTGTTCCACTCCATTCCATTGCATTCCGTACCATTCCATTCCACT
chr4_49108801_49109201_8_-3.202215
TCCATTCATTCCATTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTGCATTCATTCCTTTCCATTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCGATTGCATTCCATTCCTTTCCATTCTATTCCATTCCGTTCCATTCCATTCCATTTGTGTTGATTCCATTTGCATTCCATTCCATTCCACTCCATTi
chr4_49108801_49109201_9_-2.498880
TCCATTCATTCCATTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTGCATTCATTCCTTTCCATTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCGATTGCATTCCATTCCTTTCCATTCTATTCCATTCCGTTCCATTCCATTCCATTTGTGTTGATTCCATTCCATTGCATTCCATTCCATTCCACTCCATTCCAATCCATTACATTCCACTCGGGTTGAATCTTTTCCATTCCATTCCAATGCCTTCCCTTCCATTCAATTCCACTCGGATTCAGTCAATTCCATTCTATTCCATTCCATTACATTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGGGTT
chr4_49108801_49109201_10_-2.748390
TTCCATTCCATTCCATTCCATTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTGCATTCCATTCC�6TTGCTTCCATTCCATTCCATTCCATTCCACTCCATTCCAATCCATTACATTCCACTCGGGTTGAATCATTTCCATTCCATTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCC
chr4_49108801_49109201_11_-3.162363
TTCCATTCCATTCCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTCCATCCCATTTGTGTTGCTTCCATTCCATTCCATTCCATTCCACTCCATTCCAATCCATTGCATTCCACTCGGGTTGAATCCTTTCCATTCCATTCCATTGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTCTGTTTCACTCCATTCCCTTGCATTCCATACCATTCCATTCCACT
chr4_49108801_49109201_12_-2.685242
TTCCATTCCATTCCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTCCATCCCATTTGTGTTGCTTCCATTCCATTCCATTCCATTCCACTCCATTCCAATCCATTGCATTCCACTCGGGTTGAATCCTTTCCATTCCATTCCATTGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTCTGTTTCACTCCATTCCCTTGCATTCCATACCATTCCATTCCACTCGGGTTGATTCCATTGAGTTCCATCCCATTCCATTCCATTACATTCTATTGCATTCCATTCCATTCCATACCATTCCACTTGGGTTCATTCCATACCATTCCATTCCATTCCATTCCAT
chr4_49108801_49109201_13_-2.999463
ATTCAATCTATTCCATTCCATTCCATTCCGTTCTGTTCCACTCCATTCCATTGCATTCCGTACCATTCCATTCCACTCGGGTTGATTCCATTGAATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTC
chr4_49108801_49109201_14_-2.999463
TTCCATTCCATTCTTCTCGGGTTTC�ATTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTCCATTCCTTTCCATTTGTGTTGATTCCATT chr4_49108801_49109201_15_-3.124402 TTCCATTCCATTCTTCTCGGGTTTC�ATTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTCCATTCCTTTCCATTTGTGTTGATTCCATTTGCATTCCATTCCATTCCACTCCATTCCAATCCATTACATTCCACTCGGGTTGAATCCTTTCCATTCCTTTGCAATGCATTCCCTTCCATTCAATTCCACTCGAATTCAATCTATTCCATTCCATTCCATTCCGTTCTGTTCCACTCCATTCCATTGCATTCCGTACCATTCCATTCCACT
chr4_49108801_49109201_16_-3.268308
TTCCATTCCATTCTTCTCGGGTTTTCCATTCCATTCCACATTCTATTCCATTCCATTCCATTCCTTTCCATTTGTGTTGATTCCATTCCATTCCAATCCATTCCATTACATTCCACTCCATTCCTATCCATTACATTCCATTCGGGTTGAATCCTTTCCATTCCTTTCCAATGCTTTCTCTTCCATTCAATTCCACTCAGATTCAATCATTTCCATTCCATTCCATTCCGTTCTGTTCCACTCCATTCCGTTGCATTCCATACCATTCCATTCCACCCGG
chr4_49108801_49109201_17_-3.143369
TTCCATTCCATTCTTCTCGGGTTTTCCATTCCATTCCACATTCTATTCCATTCCATTCCATTCCTTTCCATTTGTGTTGATTCCATTCCATTCCAATCCATTCCATTACATTCCACTCCATTCCTATCCATTACATTCCATTCGGGTTGAATCCTTTCCATTCCTTTCCAATGCTTTCTCTTCCATTCAATTCCACTCAGATTCAATCATTTCCATTCCATTCCATTCCGTTCTGTTCCACTCCATTCCGTTGCATTCCATACCATTCCATTCCACTCGGGTTGATTCCATTTCATTCCATTCCATTCCATTGCATTCCAATCCATTACATTCCACTCGGGTTG
chr4_49108801_49109201_18_-3.197528
TTCCATTCCATTCTTCTCGGGTTTTCCATTCCATTCCACATTCTATTCCATTCCATTCCATTCCTTTCCATTTGTGTTGATTCCATTCCATTCCAATCCATTCCATTACATTCCACTCCATTCCTATCCATTACATTCCATTCGGGTTGAATCCTTTCCATTCCTTTCCAATGCTTTCTCTTCCATTCAATTCCACTCAGATTCAATCATTTCCATTCCATTCCATTCCGTTCTGTTCCACTCCATTCCGTTGCATTCCATACCATTCCATT
chr4_49108801_49109201_19_-3.021436
TTCCATTCCATTCTTCTCGGGTTTTCCATTCCATTCCACATTCTATTCCATTCCATTCCATTCCTTTCCATTTGTGTTGATTCCATTCCATTCCAATCCATTCCATTACATTCCACTCCATTCCTATCCATTACATTCCATTCGGGTTGAATCCTTTCCATTCCTTTCCAATGCTTTCTCTTCCATTCAATTCCACTCAGATTCAATCATTTCCATTCCATTCCATTCCGTTCTGTTCCACTCCATTCCGTTGCATTCCATACCATTCCATT
chr4_49108801_49109201_20_-3.031124
TTCCATTCCATTCTTCTCGGGTTTTCCATTCCATTCCACATTCTATTCCATTCCATTCCATTCCTTTCCATTTGTGTTGATTCCATTCCATTCCAATCCATTCCATTACATTCCACTCCATTCCTATCCATTACATTCCATTCGGGTTGAATCCTTTCCATTCCTTTCCAATGCTTTCTCTTCCATTCAATTCCACTCAGATTCAATCATTTCCATTCCATTCCATTCCGTTCTGTTCCACTCCATTCCGTTGCATTCCATACCEUiCh
chr4_49108801_49109201_21_-2.934214
TTCCATTCCATTCTTCTCGGGTTTTCCATTCCATTCCACATTCTATTCCATTCCATTCCATTCCTTTCCATTTGTGTTGATTCCATTCCATTCCAATCCATTCCATTACATTCCACTCCATTCCTATCCATTACATTCCATTCGGGTTGAATCCTTTCCATTCCTTTCCAATGCTTTCTCTTCCATTCAATTCCACTCAGATTCAATCATTTCCATTCCATTCCATTCCGTTCTGTTCCACTCCATTCCGTTGCATTCCATACCATTC
chr4_49108801_49109201_22_-3.052313
TTCCATTCCATTCTTCTCGGGTTTTCCATTCCATTCCACATTCTATTCCATTCCATTCCATTCCTTTCCATTTGTGTTGATTCCATTCCATTCCAATCCATTCCATTACATTCCACTCCATTCCTATCCATTACATTCCATTCGGGTTGAATCCTTTCCATTCCTTTCCAATGCTTTCTCTTCCATTCAATTCCACTCAGATTCAATCATTTCCATTCCATTCCATTCCGTTCTGTTCCACTCCATTCCGTTGCATTCCATACCEUiCCATTCCøh
chr4_49108801_49109201_23_-3.098070
TTCCATTCCATTCTTCTCGGGTTTTCCATTCCATTCCACATTCTATTCCATTCCATTCCATTCCTTTCCATTTGTGTTGATTCCATTCCATTCCAATCCATTCCATTACATTCCACTCCATTCCTATCCATTACATTCCATTCGGGTTGAATCCTTTCCATTCCTTTCCAATGCTTTCTCTTCCATTCAATTCCACTCAGATTCAATCATTTCCATTCCATTCCATTCCGTTCTGTTCCACTCCATTCCGTTGCATTCCATACC!0iCCATTh
chr4_49108801_49109201_24_-3.190414
TTCCATTCCATTCTTCTTTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTCCATTC��TGAATCCTTTCCATTCCGTTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAACCAATTCCATTCTATTAAATTCCGTTCTGTTCCACTCCATTCCATTGCATTCCATn�TCGTGTTTCC chr4_49108801_49109201_25_-2.968565 TTCCATTCCATTCTTCTTTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTCCATTC��TGAATCCTTTCCATTCCGTTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAACCAATTCCATTCTATTAAATTCCGTTCTGTTCCACTCCATTCCATTGCATTCCATn�TCGTGTTTCCCCATTCCATTCCATTCCATTCCACTTGGGTTGATTCCATTCCGTTCCTTTCCATTGCATTCCATTCCATTCCATTCCATTCCATTCAATTCCATTCCATTCCATTCGTGTTGATGCCATTCCAATCCATA
chr4_49108801_49109201_26_-3.269595
TTCCATTCCATTCTTCTTTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTCCATTC��TGAATCCTTTCCATTCCGTTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAACCAATTCCATTCTATTAAATTCCGTTCTGTTCCACTCCATTCCATTGCATTCCATn�TCGTGTTTCCCCATTC chr4_49108801_49109201_27_-3.269595 TTCCATTCCATTCTTCTTTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTCCATTC��TGAATCCTTTCCATTCCGTTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAACCAATTCCATTCTATTAAATTCCGTTCTGTTCCACTCCATTCCATTGCATTCCATn�TCGTGTTTCCCCATTCCATTCCATTCCATTCCACTTGGGTTGATTCCATTCCGTTCCTTTCCATTGCATTCCATTCCATTCCATTCCATTCCATTCCATTCCACTCCATTCCAT
chr4_49108801_49109201_28_-3.269595
TTCCATTCCATTCTTCTTTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTCCATTC��TGAATCCTTTCCATTCCGTTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAACCAATTCCATTCTATTAAATTCCGTTCTGTTCCACTCCATTCCATTGCATTCCATn`�TCGTGTTTCCCCATTCCATTCCATTCCATTCCACTTGGGTTGATTCCATTCCGTTCCTTTCCATTGCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATT
chr4_49108801_49109201_29_-2.772878
TTCCATTCCATTCTTCTTTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTCCATTC��TGAATCCTTTCCATTCCGTTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAACCAATTCCATTCTATTAAATTCCGTTCTGTTCCACTCCATTCCATTGCATTCCAT
chr4_49108801_49109201_30_-2.427795
TTCCATTCCATTCTTCTGATTCCATTTCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTCCATTCCATTCCATTTGTGTTGATTCCATTCCATTCCATTCCATTGCATTCCATTCCACTCCATTCCAATCGATTACATTCCACTCGGTTTGAATCCT
chr4_49108801_49109201_31_-2.752935
TTCCATTCCATTCTTCTTCGGGTTGAGTU�CATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTCCGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGTGTTGATTCCATTGAATTCCATCCCATTCCATTCCATTCCATTCTATTGCATTCCATTCTATTCCATTCCACTCGTGTTGATTCCCTTCCATTCCATTCCATTCCATTCCACTTGGGTTGATTCCATTCCGTTCCTTTCCATTGCTTTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCGTTCC
chr4_49108801_49109201_32_-2.974784
TTCCATTCCATTCTTCTTCGGGTTGAGTU�CATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTCCGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGTGTTGATTCCATTGAATTCCATCCCATTCCATTCCATTCCATTCTATTGCATTCCATTCTATTCCATTCCACTCGTGTTGATTCCCTTCCATTCCATTCCATTCCATTCCATTCCACTTGGGTTGATTCCATTCCGTTCCTTTCCATTGCTTTCCATTCCATTCCATTCTATTCC
chr4_49108801_49109201_33_-3.278945
TCAATCAAµ�ATCCATTACATTCCACTCGGGTTGAATCCTTTCCATTCCATTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTGAGTTCTATTCCATTCCGTTCTGTTGCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGGGTTGATTCCATTGAATTCCATCCCATTCCCTTGCATTCCATGCTATTGT
chr4_49108801_49109201_34_-3.043925
TCAATCAAµ�ATTACATTCCACTCGGGTTTCCTTTCCATTCCATTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTCCGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGTGTTGATTCCATTGAATTCCATCCCATTCCATTCCATTCCATTCTATTGCATTCCATTCTATTCCATTCCACTCGTGTTGATTCCCTTCCATTCCATTCCATTCCATTCCACTTGGGTTGATTCCATTCCGTTCCTTTCCATTGCTTTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCGTTCC
chr4_49108801_49109201_35_-3.265774
TCAATCAAµ�ATTACATTCCACTCGGGTTTCCTTTCCATTCCATTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTCCGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGTGTTGATTCCATTGAATTCCATCCCATTCCATTCCATTCCATTCTATTGCATTCCATTCTATTCCATTCCACTCGTGTTGATTCCCTTCCATTCCATTCCATTCCATTCCATTCCACTTGGGTTGATTCCATTCCGTTCCTTTCCATTGCTTTCCATTCCATTCCATTCTATTCC
chr4_49108801_49109201_36_-2.795212
TTCCATTCCATTCTTCTTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTACCATTCCATTCCACTGCATTCCAACCCATTACATTGCACTCGGGTTGAATC©hTCCATTCCATTCCAATGCATTCCCTTTCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTCTGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCA}°h©hCATTCCATACCATTCCATTCCACTCG}°hTTCAATTCC�i
chr4_49108801_49109201_37_-3.021895
TTCCATTCCATTCTTCTTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTACCATTCCATTCCACTGCATTCCAACCCATTACATTGCACTCGGGTTGAATCTGTTGATCATTCCATTGTTCTGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGGG��
chr4_49108801_49109201_38_-3.197987
TTCCATTCCATTCTTCTTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTACCATTCCATTCCACTGCATTCCAACCCATTACATTGCACTCGGGTTGAATCTGTTGATCATTCCATTCCATTCCATTCCACTTGGGTTGATTCCATTCCGTTCCTTTCCATTGCATTCCATTCCATTCCATTCCATTTCATTCCATTCCGTTCCTTTCCATTCGTGTTGATGCCATTCCAATCCATAC
chr4_49108801_49109201_39_-2.800047
TTCCATTCCATTCTTCTTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTACCATTCCATTCCACTGCATTCCAACCCATTACATTGCACTCGGGTTGAATCU¥hTCTATTCCATTCCGTTCTGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGGG��
chr4_49108801_49109201_40_-3.261299
TTCCATTCCATTCTTCTTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTACCATTCCATTCCACTGCATTCCAACCCATTACATTGCACTCGGGTTGAATC3¥hTCCATTCCATTCCAATGCATTCCCTTTCATTCAATTCC�i
chr4_49108801_49109201_41_-2.767398
TTCCATTCCATTCTTCTTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTACCATTCCATTCCACTGCATTCCAACCCATTACATTGCACTCGGGTTGAATCTCTATTCCATTCCGTTCTGTTCCACTCCATTCCATTGTTCC�i
chr4_49108801_49109201_42_-2.988822
TTCCATTCCATTCTTCTTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTACCATTCCATTCCACTGCATTCCAACCCATTACATTGCACTCGGGTTGAATCTCTATGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGGGTTGATTCCATTGAATTCCATCCCATTCCATTCCATTCCATTTTATTGCATTCC��
chr4_49108801_49109201_43_-3.143724
TTCCATTCCATTCTTCTTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTACCATTCCATTCCACTGCATTCCAACCCATTACATTGCACTCGGGTTGAATCC�CCATTCCATTCCACTCGGGTTGATTCCATTGAATTCCATCCCATTCCATTCCATTCCATTCTATTGCATTCCATTCAATTCCATTGCACTCGTGTTGATTCCCTTACATTCCATTCCATTCCATTCCACTCGGGTTGATTCCATTCCTTTCCTTTCCATTGCATTCTATTC
chr4_49108801_49109201_44_-3.226215
TTCCATTCCATTCTTCTTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTACCATTCCATTCCACTGCATTCCAACCCATTACATTGCACTCGGGTTGAATCC�GCATTCCATACATTCTATTGCATTCCATTCCATTCCATTGi
chr4_49108801_49109201_45_-2.742254
TTCCATTCCATTCTTCTTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTACCATTCCATTCCACTGCATTCCAACCCATTACATTGCACTCGGGTTGAATC
chr4_49108801_49109201_46_-2.975396
TCCATTTCCATTCTTCTTCGGGTTTATTCCATTTCATTCCATTAAATTCCATTCCATTCTATTCCATTCGGGTTTATTCCAATTCATTCCATTCC
#�CCATTCCATTCCACTGCATTCCAACCCATTACATTGCACTCGGGTTGAATCCTTTCCATTCCATTCCAATGCATTCCCTTTCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTT~©hTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCA}°h
chr4_49108801_49109201_47_-3.202080
TCCATTTCCATTCTTCTTCGGGTTTATTCCATTTCATTCCATTAAATTCCATTCCATTCTATTCCATTCGGGTTTATTCCAATTCATTCCATTCC
TGTTGATCATTCCATTGTTCTGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGGG��ATGCATTCCCTTTCATTCAATTCC�i
chr4_49108801_49109201_48_-2.980231
TCCATTTCCATTCTTCTTCGGGTTTATTCCATTTCATTCCATTAAATTCCATTCCATTCTATTCCATTCGGGTTTATTCCAATTCATTCCATTCC
U¥hTCTATTCCATTCCGTTCTGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGGG��ATGCATTCCCTTTCATTCAATTCC�i
chr4_49108801_49109201_49_-2.947582
TCCATTTCCATTCTTCTTCGGGTTTATTCCATTTCATTCCATTAAATTCCATTCCATTCTATTCCATTCGGGTTTATTCCAATTCATTCCATTCC
TCTATTCCATTCCGTTCTGTTCCACTCCATTCCATTGGCACTCGGGTTGAATCCTTTCCATTCCATTCCAATGCATTCCCTTTCATTCAATTCC�i
chr4_49108801_49109201_50_-3.169007
TCCATTTCCATTCTTCTTCGGGTTTATTCCATTTCATTCCATTAAATTCCATTCCATTCTATTCCATTCGGGTTTATTCCAATTCATTCCATTCC
TCTATGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGGGTTGATTCCATTGAATTCCATCCCATTCCATTCCATTCCATTTTATTGCATTCC��
chr4_49108801_49109201_51_-2.922439
TCCATTTCCATTCTTCTTCGGGTTTATTCCATTTCATTCCATTAAATTCCATTCCATTCTATTCCATTCGGGTTTATTCCAATTCATTCCATTCC
~©hCATTCCATACCATTCCATTCCACTCG}°hACATTGCACTCGGGTTGAATCCTTTCCATTCCATTCCAATGCATTCCCTTTCATTCAATTCC�i
chr4_49108801_49109201_52_-2.831805
CCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTGCATTCCATTCTGTTCCACTCCATTCCATTGCATTCCATACAATTCCCTTCCACTCGGGTTGATTCCATTGAATTCCATCCCATTCCATTTCATTCCATTCTATTGCATTCCATTCCATTCCATTCCACTCGTGTTGATTCCTTT
chr4_49108801_49109201_53_-2.954651
ATCCATTACATÆn�TAAATCCTTTCCATTCCATTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTCCATTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGGGTTGATTCCATTTAATTCCATCCCATTCCA
chr4_49108801_49109201_54_-3.080724
ATCCATTACATÆn�TTCCTTTCCATTCCATTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTCCGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGTGTTGATTCCATTGAATTCCATCCCATTCCATTCCATTCCATTCTATTGCATTCCATTCTATTCCATTCCACTCGTGTTGATTCCCTTCCATTCCATTCCATTCCATTCCACTTGGGTTGATTCCATTCCGTTCCTTTCCATTGCTTTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCGTTCC
chr4_49108801_49109201_55_-3.268197
ATCCATTACATÆn�TATCCTTTCCATTAATTCCATTCTATTCCATTCCGTTCTGTTTCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGGGTTGATTCCATTGAGTTCCATCCCATTCCATTCCATTACATTCTATTGCATTCCATTCCATTCCATACCATTCCACTTGGGTTCATTCCATACCATTCCATTCCATTCCATTCCAT
chr4_49108801_49109201_56_-3.240169
ATCCATTACATÆn�TATCCTTTCCATTCTTTCCATTCTATTCCATTCCATTCCATTCCATTTGTGhTTCGGGTTTATTCCAATTCATTCCATTCC
chr4_49108801_49109201_57_-3.057595
ATCCATTACATÆn�TATCCTTCCATTCCTTTCCATTCTATTCCATTCCATTCCATTCCATTTGTGhTTCGGGTTTATTCCAATTCATTCCATTCC
chr4_49108801_49109201_58_-2.595500
TCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTCCATTCCATTTGTGTTGATTCCATTCCATTCCATTCCATTCCGCTCCTTTGCAATCCATTACATTCCACTCGTGTTGAATCCTTTCCATTCCATTCCAAAGCATTCCCTTCCATTCAATTCCACTCGGAT
chr4_49108801_49109201_59_-2.072622
TCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCT6®ATTAAATTCCATTCCATTCTATTCCATTCGGGTTTATTCCAATTCATTCCATTCC
chr4_49108801_49109201_60_-2.698163
CCAATGCCATTCAATTCCACTCGGATTCAATCAATTCCATTCCATTCCATTCCGTTCTGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTACACTCGGGTTGATTCCATTGAATTCCATTCCGTTCCATTCCATTCCATTCTATTGCATTCCATTCCATTCCATTATACTCGAGTTCATTCCATTCCATTCCTTTCCACTCCACTCCGGTTGATTCCATTCCATTAAATTCCATTCCATTGCATTCCATTCCATTCCAT
chr4_49108801_49109201_61_-2.698163
CCAATGCCATTCAATTCCACTCGGATTCAATCAATTCCATTCCATTCCATTCCGTTCTGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTACACTCGGGTTGATTCCATTGAATTCCATTCCGTTCCATTCCATTCCATTCTATTGCATTCCATTCCATTCCATTCTAC
chr4_49108801_49109201_62_-2.397133
CCAATGCCATTCAATTCCACTCGGATTCAATCAATTCCATTCCATTCCATTCCGTTCTGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTACACTCGGGTTGATTCCATTGAATTCCATTCCATTCCATTCCATTCCATTCTACTGCATTCCATTCCATTCCATTCCTCTGCGGTTCATTCCATT
chr4_49108801_49109201_63_-2.841816
CCAATGCCATTCAATTCCACTCGGATTCAATCAATTCCATTCCATTCCATTCCGTTCTGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTTGGGTTGATTCCATTGAATTCCGTTCCATTCCATTCCATTCAATTCTATTCCATTCCA
chr4_49108801_49109201_64_-2.540786
CCAATGCCATTCAATTCCACTCGGATTCAATCAATTCCATTCCATTCCATTCCGTTCTGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTTGGGTTGATTCCATTGAATTCCGTTCCATTCCATTCCATTCAATTCTATTGCATTCCATTCCATTCAATTCTATTGCATTCCATTCCATTCCATTCCACTGGGGTTGATTCCATTCC
chr4_49108801_49109201_65_-2.870462
CATTCCATTCCATTCCATTCTATTGCATACCATTCCAATCCATTCCACTGGGGTTGATTGCATTCCATTCCATTCTACTCCACTGCGGTTGATTCCATTTCCATTCCATACCATTGCATACAó5GGG�®h
chr4_49108801_49109201_66_-2.870462
CATTCCATTCCATTCCATTCTATTGCATACCATTCCAATCCATTCCACTGGGGTTGATTGCATTCCATTCCATTCTACTCCACTGCAGTTCCCTTCCTTTCCATTCCATACCATTGCATACAó5GGG�®h
chr4_49108801_49109201_67_-2.702228
CCAATGCCATTCAATTCCACTCGGATAGTTCCATTCCATTCCATTCCATTCCATTCCATTCCATTTGTGTTGATACCATTCCATTCCATTCCCTTCCTTTCCATTCCATACCATTGCATACAó5GGG�®h
#�CTTCTGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGGGTTGATTCCATTGAATTCCATTCCATTCCATTCCATTCCATTCTTTTGCATTCCATTCCATTCCATTCCACTGCGGTTGATTCCATTCCAT
chr4_49108801_49109201_68_-3.012322
CCAATGCCATTCAATTCCACTCGGATAGTTCCATTCCATTCCATTCCATTCCATTCCATTCCATTTGTGTTGATACCATTCCATTCCATTCCCTTCCTTTCCATTCCATACCATTGCATACAó5GGG�®h
#�CTTCTGTTCCACTCCATTCATTCCATACCATTCCATTCCACTCGGGTTGATTCCATTGAATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCTATTGCATTCCATTCCATTCCATTGCAATGG
chr4_49108801_49109201_69_-2.808202
CCAATGCCATTCAATTCCACTCGGATAGTTCCATTCCATTCCATTCCATTCCATTCCATTCCATTTGTGTTGATACCATTCCATTCCATTCCCTTCCTTTCCATTCCATACCATTGCATACAó5GGG�®h
#�CTTCTGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGGGTTGATTCCATTGAATTCCATTCCATTCCATTCCATTCCATTCCATTCTATTGCATTCCATTCCATTCCATTCCACTGCGGTTCATTCCATTCCATTCCATTCTACTCCACTCGGGTTGATTCCATTCCATTCCATTCCA
chr4_49108801_49109201_70_-0.477121
CCATTGCATTCCATTCCTTTCCATTCCGTTCCATTCCATTCCATTCCATTCCATTCCATTCCATTTGTGTTGATACCATTCCATTCCATTCTCGGATTCAATCAATTCCATTCCATTCCATTCCGTTTTGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTACACTCGGGTTGATTCCATTGAATTCCATTCCGTTCCATTCCATTCCATTCTATTGCATTCCATTCCATTCCATTATACTCGAGTTCATTCCATTCCATTCCTTTCCACTCCACTCCGGTTGATTCCATTCCATTAAATTCCATTCCATTGCATTCCATTCCATTCCAT
chr4_49108801_49109201_71_-2.152610
ACTGGTGTTTATTCCTTTCCACTCCATTCCATTCCATTCCATTCGGGTTTATTCCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTTGTGTTGATTCCC�TACATTCCACTCGGGTTGAATCCTTTCCATTCCTTTCCAATGCATTCCCTTCCATTCAATTCCACTCGGTTTCAATCAATTCCATTCCATTCCATTCCGTTCTGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCTGTCGGGATGATTCCGTTCCATTCCATTATATTCTGTTCCATTCCATTCCATTCCATTTAACTCGGGTTGATTCCATTC
chr4_49108801_49109201_72_-2.358327
ACTGGTGTTTATTCCTTTCCACTCCATTCCATTCCATTCCATTCGGGTTTATTCCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTTGTGTTGATTCCACTTCACATTCCACTCGGGTTGAATCCTTTCCATTCCTTTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCTTTCCATTCCATTCCGTTCTGTTCCACTCCATTCCATTGTATTCCATACCATTCCATTCCACTCGGGTTGATTCCGT
chr4_49108801_49109201_73_-2.068520
ACTGGTGTTTATTCCTTTCCACTCCATTCCATTCCATTCCATTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTCCATCCCATTTGTGTTGCTTCCATTCCATTCCATTCCATTCCACTCCATTCCAATCCATTGCATTCCACTCGGGTTTCCTTTCCATTCCATTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTCCGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGTGTTGATTCCATTGAATTCCATCCCATTCCATTCCATTCCATTCTATTGCATTCCATTCTATTCCATTCCACTCGTGTTGATTCCCTTCCATTCCATTCCATTCCATTCCACTTGGGTTGATTCCATTCCGTTCCTTTCCATTGCTTTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCGTTCC
chr4_49108801_49109201_74_-2.290369
ACTGGTGTTTATTCCTTTCCACTCCATTCCATTCCATTCCATTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTCCATCCCATTTGTGTTGCTTCCATTCCATTCCATTCCATTCCACTCCATTCCAATCCATTGCATTCCACTCGGGTTTCCTTTCCATTCCATTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTCCGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGTGTTGATTCCATTGAATTCCATCCCATTCCATTCCATTCCATTCTATTGCATTCCATTCTATTCCATTCCACTCGTGTTGATTCCCTTCCATTCCATTCCATTCCATTCCATTCCACTTGGGTTGATTCCATTCCGTTCCTTTCCATTGCTTTCCATTCCATTCCATTCTATTCC
chr4_49108801_49109201_75_-1.710205
ACTGGTGTTTATTCCTTTCCACTCCATTCCATTCCATTCCATTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTCCATCCCATTTGTGTTGCTTCCATTCCATTCCATTCCATTCCACTCCATTCCAATCCATTGCATTCCACTCGGGTTGAATCCTTTCCATTCCATTCCATTGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTCTGTTTCACTCCATTCCCTTGCATTCCATACCATTCCATTCCACT
chr4_49108801_49109201_76_-1.233084
ACTGGTGTTTATTCCTTTCCACTCCATTCCATTCCATTCCATTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTCCATCCCATTTGTGTTGCTTCCATTCCATTCCATTCCATTCCACTCCATTCCAATCCATTGCATTCCACTCGGGTTGAATCCTTTCCATTCCATTCCATTGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTCTGTTTCACTCCATTCCCTTGCATTCCATACCATTCCATTCCACTCGGGTTGATTCCATTGAGTTCCATCCCATTCCATTCCATTACATTCTATTGCATTCCATTCCATTCCATACCATTCCACTTGGGTTCATTCCATACCATTCCATTCCATTCCATTCCAT
chr4_49108801_49109201_77_-1.869203
°�iGTGTTGCTCCACTCCATTû�iCATTCCATTCCATTCCATTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTCT|°h
ATCCATTACATTCCACTCGGGTTGAATCCTTTCCATTCCATTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTGAGTTCTATTCCATTCCGTTCTGTTGCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGGGTTGATTCCATTGAATTCCATCCCATTCCCTTGCATTCCATGCTATTGT
chr4_49108801_49109201_78_-2.394722
°�iGTGTTGCTCCACTCCATTû�iCATTCCATTCCATTCCATTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTCT|°h
ATTACATTCCACTCGGGTTGAATCCTTTCCATTCCATTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATGCAATTCCATTCCGTTCTGTTCCACTCCATTCCATTGCATTCCATAGCATTCCATTCCACTCGGGTTGATTCCATTGAATTCC
chr4_49108801_49109201_79_-2.188785
°�iGTGTTGCTCCACTCCATTû�iCATTCCATTCCATTCCATTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTCT|°h
ATTACATTCCACTCGGGTTGAATCCTTTCCATTCCATTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTACGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGGGTTGATTCCATTGAATTCCATCCCATTCCATTCCATTC
chr4_49108801_49109201_80_-1.634183
°�iGTGTTGCTCCACTCCATTû�iCATTCCATTCCATTCCATTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTCT|°h
ATTACATTCCACTCGGGTTTCCTTTCCATTCCATTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTCCGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGTGTTGATTCCATTGAATTCCATCCCATTCCATTCCATTCCATTCTATTGCATTCCATTCTATTCCATTCCACTCGTGTTGATTCCCTTCCATTCCATTCCATTCCATTCCACTTGGGTTGATTCCATTCCGTTCCTTTCCATTGCTTTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCGTTCC
chr4_49108801_49109201_81_-1.856032
°�iGTGTTGCTCCACTCCATTû�iCATTCCATTCCATTCCATTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTCT|°h
ATTACATTCCACTCGGGTTTCCTTTCCATTCCATTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTCCGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGTGTTGATTCCATTGAATTCCATCCCATTCCATTCCATTCCATTCTATTGCATTCCATTCTATTCCATTCCACTCGTGTTGATTCCCTTCCATTCCATTCCATTCCATTCCATTCCACTTGGGTTGATTCCATTCCGTTCCTTTCCATTGCTTTCCATTCCATTCCATTCTATTCC
chr4_49108801_49109201_82_-2.258810
°�iGTGTTGCTCCACTCCATTû�iCATTCCATTCCATTCCATTCGGGTTTATTCCATTTCATTCCATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTCT|°h
ATTACATTCCACTCGGGTTGTCCTTTCCATTAATTCCATTCTATTCCATTCCGTTCTGTTTCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGGGTTGATTCCATTGAGTTCCATCCCATTCCATTCCATTACATTCTATTGCATTCCATTCCATTCCATACCATTCCACTTGGGTTCATTCCATACCATTCCATTCCATTCCATTCCAT
chr4_49108801_49109201_83_-2.337121
TGTTGATCATTCCATTCCATTCCATTCCACTTGGGTTGATTCCATTCCGTTCCTTTCCATTGCATTCCATTCCATTCCATTCCATTTCATTCCATTCCGTTCCTTTCCATTCGTGTTGATGCCATTCCAATCCATAC
chr4_49108801_49109201_84_-2.127957
TGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGGGTTGATTCCATTGAATTCCATCCCATTCCATTCCATTCCATTTTATTGCATTCC���CATTCTATTCCATTCCATTCT|°h
chr4_49108801_49109201_85_-2.282859
C�CCATTCCATTCCACTCGGGTTGATTCCATTGAATTCCATCCCATTCCATTCCATTCCATTCTATTGCATTCCATTCAATTCCATTGCACTCGTGTTGATTCCCTTACATTCCATTCCATTCCATTCCACTCGGGTTGATTCCATTCCTTTCCTTTCCATTGCATTCTATTC
chr4_49108801_49109201_86_-2.114431
°�iTCCATTCCGTGTTGA6CCATCCACTCCATTû�i
ATTACATTCCACTCGGGTTTTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTCCGTTGCACTCCATTCCATTGCATTCCACCCCATTCCATTCCACTCGGGTTGATTCCATTGAATTCCATCCCATTCCATTCCATTCCATCCTATTGCATTCCATTCCACTCGTGTTGATTCCGTTCCATTCCATTCCATTCCATTCCACTTCGGTTGATTCCATTCCGTTCCTTTCCATTGCATTCCATTCCATTCC
chr4_49108801_49109201_87_-1.328814
°�iTCCATTCCGTGTTGA6CCATCCACTCCATTû�i
ATTACATTCCACTCGGGTTTCCTTTCCATTCCATTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTCCGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGTGTTGATTCCATTGAATTCCATCCCATTCCATTCCATTCCATTCTATTGCATTCCATTCTATTCCATTCCACTCGTGTTGATTCCCTTCCATTCCATTCCATTCCATTCCACTTGGGTTGATTCCATTCCGTTCCTTTCCATTGCTTTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCGTTCC
chr4_49108801_49109201_88_-1.550663
°�iTCCATTCCGTGTTGA6CCATCCACTCCATTû�i
ATTACATTCCACTCGGGTTTCCTTTCCATTCCATTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTCCGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGTGTTGATTCCATTGAATTCCATCCCATTCCATTCCATTCCATTCTATTGCATTCCATTCTATTCCATTCCACTCGTGTTGATTCCCTTCCATTCCATTCCATTCCATTCCATTCCACTTGGGTTGATTCCATTCCGTTCCTTTCCATTGCTTTCCATTCCATTCCATTCTATTCC
chr4_49108801_49109201_89_-1.401401
ACTCCATTCCATTCCATTCCATTGCATTCCATTCCATTCCATTGCATTCCATTGCATTCCATTCGATTCCATTCGGGTTTGCATTTTATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCCGTTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTTGTGTTGATACCATTCCATTCCATTCCCTTCCTTTCCATTCCATACCATTGCATACAó5GGGTTGAATCCTTTCCATTCCATTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCCATTCCATTCCACTCGGGTTGTTCCATTCCATTCCATTCCTTTCCATTCCATTCCATTCCGTTCCACTCGGCTTGA
chr4_49108801_49109201_90_-1.146128
ACTCCATTCCATTCCATTCCATTGCATTCCATTCCATTCCATTGCATTCCATTGCATTCCATTCGATTCCATTCGGGTTTGCATTTTATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCCGTTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTTGTGTTGATACCATTCCATTCCATTCTCGGATTCAATCAATTCCATTCCATTCCATTCCGTTTTGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTACACTCGGGTTGATTCCATTGAATTCCATTCCGTTCCATTCCATTCCATTCTATTGCATTCCATTCCATTCCATTATACTCGAGTTCATTCCATTCCATTCCTTTCCACTCCACTCCGGTTGATTCCATTCCATTAAATTCCATTCCATTGCATTCCATTCCATTCCAT
chr4_49108801_49109201_91_-1.146128
ACTCCATTCCATTCCATTCCATTGCATTCCATTCCATTCCATTGCATTCCATTGCATTCCATTCGATTCCATTCGGGTTTGCATTTTATTCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCCGTTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTTGTGTTGATACCATTCCATTCCATTCTCGGATTCAATCAATTCCATTCCATTCCATTCCGTTTTGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTACACTCGGGTTGATTCCATTGAATTCCATTCCGTTCCATTCCATTCCATTCTATTGCATTCCATTCCATTCCATTCTAC
chr4_49108801_49109201_92_-1.460522
ACTCCATTCCATTCCATTCCATTGCATTCCATTCCATTCCATTGCATTCCATTGCATTCCATTCGATTCCATTCGGGTTà�M�TTCCATTCCATTCCATTCCATTCCATTCCATTTGTGTTGATACCATTCCATTCCATTCCCTTCCTTTCCATTCCATACCATTGCATACAó5GGGTTGAATCCTTTCCATTCCATTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCCATTCCATTCCGTTTTGTTCCACTCCATTCCATTGCATTCCATACCATTCCA
chr4_49108801_49109201_93_-0.924279
ACTCCATTCCATTCCATTCCATTGCATTCCATTCCATTCCATTGCATTCCATTGCATTCCATTCGATTCCATTCGGGTTà�M�TTCCATTCCATTCCATTCCATTCCATTCCATTTGTGTTGATACCATTCCATTCCATTCCCTTCCTTTCCATTCCATACCATTGCATACAó5GGGTTGAATCCTTTCCATTCCATTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCCATTCCATTCCACTCGGGTTGTTCCATTCCATTCCATTCCTTTCCATTCCATTCCATTCCGTTCCACTCGGCTTGA
chr4_49108801_49109201_94_-0.669007
ACTCCATTCCATTCCATTCCATTGCATTCCATTCCATTCCATTGCATTCCATTGCATTCCATTCGATTCCATTCGGGTTà�M�TTCCATTCCATTCCATTCCATTCCATTCCATTTGTGTTGATACCATTCCATTCCATTCTCGGATTCAATCAATTCCATTCCATTCCATTCCGTTTTGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTACACTCGGGTTGATTCCATTGAATTCCATTCCGTTCCATTCCATTCCATTCTATTGCATTCCATTCCATTCCATTATACTCGAGTTCATTCCATTCCATTCCTTTCCACTCCACTCCGGTTGATTCCATTCCATTAAATTCCATTCCATTGCATTCCATTCCATTCCAT
chr4_49108801_49109201_95_-0.669007
ACTCCATTCCATTCCATTCCATTGCATTCCATTCCATTCCATTGCATTCCATTGCATTCCATTCGATTCCATTCGGGTTà�M�TTCCATTCCATTCCATTCCATTCCATTCCATTTGTGTTGATACCATTCCATTCCATTCTCGGATTCAATCAATTCCATTCCATTCCATTCCGTTTTGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTACACTCGGGTTGATTCCATTGAATTCCATTCCGTTCCATTCCATTCCATTCTATTGCATTCCATTCCATTCCATTCTAC
chr4_49108801_49109201_96_-1.643060
TGTTGATCATTCCATTCCATTCCATTCCACTTGGGTTGATTCCATTCCGTTCCTTTCCATTGCATTCCATTCCATTCCATTCCATTTCATTCCATTCCGTTCCTTTCCATTCGTGTTGATGCCATTCCAATCCATAC
chr4_49108801_49109201_97_-1.522879
CTATTCCATTCCATTCCATTCCATTCCATTTGTGTTGATTCCTTTTGCATTCCATTCCATTCCACTCCATTCCAATCCATGTTGAATCCTTTCCATTCCTTTGCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCCATTCCATTCCGTTCTGTTCCACTGCATTCATTCCATACCATTCCATTCCACTCGGGTTGATTCCATTGAATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCTATTGCATTCCATTCCATTCCATTGCAATGG
chr4_49108801_49109201_98_-0.176091
CCATTACATTCCACTCGGGTTGAATCCTTTCCATTCCGTTCCAATGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTCCGTTGCACTCCATTCCATTGCATTCCACCCCATTCCATTCCACTCGGGTTGATTCCATTGAATTCCATCCCATTCCATTCCATTCCATCCTATTGCATTCCATTCCACTCGTGTTGATTCCGTTCCATTCCATTCCATTCCATTCCACTTCGGTTGATTCCATTCCGTTCCTTTCCATTGCATTCCATTCCATTCC
chr4_49108801_49109201_99_-0.176091
TCCATTCCATTCCATTCCACTCCATTCCAATCCATTACATTCCACTCGGTTTGAATCTTTTCCATTCCATTCCAATGCATTCCCTTCCATTCAATTCAACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTCCGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTTCACTGTGGTTGATTCCATTGAATTCCATCCCATTCCATTCCTTTCCATTCTATTGCATTCCATTCCATTCCATTCCACTCGTGTTGATTCCCTTCCATTCCATTCCATTCCTTTCCACTTGGGTTGATTCCAT
chr4_49108801_49109201_100_-0.454932
TCCATTCCATTCCATTCCATTGCATTCCATTCCTTTCCATTCTATTCCATTCCATTCCATCCCATTTGTGTTGCTTCCATTCCATTCCATTCCATTCCACTCCATTCCAATCCATTGCATTCCACTCGGGTTGAATCCTTTCCATTCCATTCCATTGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTCTGTTTCACTCCATTCCCTTGCATTCCATACCATTCCATTCCACTCGGGTTGATTCCATTGAGTTCCATCCCATTCCATTCCATTACATTCTATTGCATTCCATTCCATTCCATACCATTCCACTTGGGTTCATTCCATACCATTCCATTCCATTCCATTCCAT
chr4_49108801_49109201_101_-0.490844
TCCATTCCAAAGCATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCTATTCCATTCCGTTCCGTTCCACTCCATTCCATTGCATTCCATACCATTCCATTCCACTCGTGTTGATTCCATTGAATTCCATCCCATTCCATTCCATTCCATTCTATTGCATTCCATTCTATTCCATTCCACTCGTGTTGATTCCCTTCCATTCCATTCCATTCCATTCCACTTGGGTTGATTCCATTCCGTTCCTTTCCATTGCTTTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCGTTCC
chr4_49108801_49109201_102_0.000000
CATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTGGTGTTGATTCCATTCCATTCCATTCCACTCCTCTCCATTGCAATCCATTACATTCCACTCGGGTTGAATCCTTTCCATTCCATTCCAATGAATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCCATTCCATTCTGTTCTGTTCCACTGCATTCCATTGCATTTCATACCATTCCATTCCACTCGGTTTGATTCCATTGAATTCCATTGAATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCTATTGCATTCCATTCCATTCCATTCC
chr4_49108801_49109201_103_0.000000
TTTATTCCATTTCATTCTATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTGGTGTTGATTCCATTCCATTCCATTCCACTCCTCTCCATTGCAATCCATTACATTCCACTCGGGTTGAATCCTTTCCATTCCATTCCAATGAATTCCCTTCCATTCAATTCCACTCGGATTCAATCAATTCCATTCCATTCCATTCTGTTCTGTTCCACTGCATTCCATTGCATTTCATACCATTCCATTCCACTCGGTTTGATTCCATTGAATTCCATTGAATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCTATTGCATTCCATTCCATTCCATTCC
chr4_49108801_49109201_1
]
java.lang.ArrayIndexOutOfBoundsException: 4
at abra.ScoredContig.convertAndFilter(ScoredContig.java:53)
at abra.ReAligner.assemble(ReAligner.java:1030)
at abra.ReAligner.processRegion(ReAligner.java:1196)
at abra.ReAligner.processChromosomeChunk(ReAligner.java:339)
at abra.ReAlignerRunnable.go(ReAlignerRunnable.java:21)
at abra.AbraRunnable.run(AbraRunnable.java:20)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Thanks. Could you please email the full log file to lmose at unc dot edu ?
Yes, thanks for sending.
I believe this may have been due to a memory issue in the library we use for BAM compression (GKL).
Can you try with GKL disabled? i.e. Use the --no-gkl flag.
Also, what operating system are you using?
I'm using Centos 7.3
I tried the --no-gkl flag. Realignment was successful but crashed when writing the final BAM file. The default setting --dist 1000 was used.
java.lang.OutOfMemoryError: Java heap space
at htsjdk.samtools.BAMRecordCodec.decode(BAMRecordCodec.java:198)
at htsjdk.samtools.BAMFileReader$BAMFileIterator.getNextRecord(BAMFileReader.java:682)
at htsjdk.samtools.BAMFileReader$BAMFileIterator.advance(BAMFileReader.java:656)
at htsjdk.samtools.BAMFileReader$BAMFileIterator.next(BAMFileReader.java:650)
at htsjdk.samtools.BAMFileReader$BAMFileIterator.next(BAMFileReader.java:620)
at htsjdk.samtools.SamReader$AssertingIterator.next(SamReader.java:569)
at htsjdk.samtools.SamReader$AssertingIterator.next(SamReader.java:543)
at abra.SortedSAMWriter.processChromosome(SortedSAMWriter.java:214)
at abra.SortedSAMWriter.outputFinal(SortedSAMWriter.java:160)
at abra.SortedSAMWriterRunnable.go(SortedSAMWriterRunnable.java:18)
at abra.AbraRunnable.run(AbraRunnable.java:20)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
OK, Thanks. Please continue using the --nosort option if you need results now. I'll work on implementing a disk backed sort for cases with extremely high pileups and will default gkl to off in the next release.
I have tested abra2 with --no-gkl --dist 500000 --nosort, but it still crashed. I have emailed you the log files.
That's odd. So --no-gkl worked for realignment once, but not the second time around?
I've seen some occasional crashes with gkl enabled here but none with gkl disabled, so I have to say I'm at a bit of a loss here.
Is there a specific version that worked for you reliably?
Are you able to compile the software on the system on which you are running?
Also, is there a reason you're using --dist 500000 ?
We've run a few hundred whole genomes through without issue on verison v2.11. Closing.