mpxv-lineages/lineage-designation

Issues

• 3 proposed C.1.1 sublineages

  #44 opened 2 months ago by corneliusroemer
  0

• Proposal for B.1.6 sublineage OPG025:A21T,E34K and others

  #41 opened 2 months ago by Vjimenez-vasquez
  8

• B.1.20 sibling sequenced in Germany, US, Portugal (13 INSDC seqs)

  #43 opened 2 months ago by corneliusroemer
  0

• Proposal for B.1.20 sublineage OPG188:E12K

  #39 opened 2 months ago by ammaraziz
  3

• Proposal for B.1.20 sublineage OPG117:S297L #2

  #40 opened 2 months ago by ammaraziz
  1

• Reference sequences for A.2 and A.2.1 lineages are same

  #42 opened 2 months ago by chainorato
  2

• B.1 sub-lineage proposal with 53 sequences circulating globally during 2023-2024

  #38 opened 9 months ago by mengfeip
  3

• Proposal for a C.1 sublineage, circulating mostly in Europe in 2023-24 [160+ seqs]

  #36 opened 9 months ago by corneliusroemer
  0

• Proposal for a B.1 sublineage, circulating in the US (CA/WA) during 2023 [36 seqs]

  #34 opened 9 months ago by corneliusroemer
  2

• Proposal for a B.1 sublineage, circulating in Germany during 2023 [32 seqs]

  #35 opened 9 months ago by corneliusroemer
  3

• Proposal for a B.1.3 sublineage potentially associated with recent outbreaks in East Asia (45 sequences)

  #32 opened a year ago by c19850727
  2

• Proposal for two B.1 sublineages with defining mut: G161797A (Colombia); and G149818A (Germany,Colombia)

  #30 opened 2 years ago by ha-ruiz75
  1

• Proposal for an A.2 sublineage sequenced in USA-TX and Portugal

  #25 opened 2 years ago by corneliusroemer
  0

• Proposal for a sublineage of A, sequenced in Nigeria and UK

  #26 opened 2 years ago by corneliusroemer
  0

• Proposal for a B.1 sublineage with defining mut C159779T (Germany, France, Sweden, Portugal, US)

  #27 opened 2 years ago by corneliusroemer
  0

• Proposal for B.1 lineage with G175093A [35 seqs, 33x USA, 1x UK, 1x Germany]

  #24 opened 2 years ago by mbosm
  2

• Proposal for a global B.1 sublineage with C182950T [19 seq]

  #22 opened 2 years ago by corneliusroemer
  0

• Proposal for B.1 sublineage with C89906T and G94798A [39 seqs, dominant in Colombia, present worldwide]

  #19 opened 2 years ago by corneliusroemer
  2

• Proposal for B.1 lineage with C18133T, G67611A, G130231A, G159277A [39 seqs, 38x USA, 1x COL]

  #20 opened 2 years ago by corneliusroemer
  2

• Proposal for an A.2 lineage sequenced 2 times: in UK and recently in US-PA

  #21 opened 2 years ago by corneliusroemer
  0

• Proposal for a sublineage of B.1 with G181367A [19 sequences as of 2022-08-31, 18x Portugal, 1x Canada]

  #14 opened 2 years ago by corneliusroemer
  0

• Proposal for a sublineage of A.2 [4 sequences, 1x US, 1x UK, 2x India]

  #15 opened 2 years ago by corneliusroemer
  0

• Proposal for a sublineage of B.1 with G5595A [19 sequences as of 2022-08-19]

  #11 opened 2 years ago by corneliusroemer
  0

• Potential new hmpxv B.1* lineage (including sublineage) identified in Peru

  #9 opened 2 years ago by Vjimenez-vasquez
  6

• Proposal for a sublineage of B.1 with 25644T [~40 sequences as of 2022-08-19]

  #10 opened 2 years ago by corneliusroemer
  5

• ENH: Produce alias_key.json file from lineage yamls

  #3 opened 2 years ago by corneliusroemer
  2

• EHN: produce md file with lineage summary

  #6 opened 2 years ago by rneher
  0

• ENH: Not auto-update time stamp unless there's a relevant change to lineages (or scripts?)

  #5 opened 2 years ago by corneliusroemer
  0

• ENH: Produce clades TSV from lineage yams

  #2 opened 2 years ago by corneliusroemer
  0