msbentsen

msbentsen's Stars

• duerrsimon/bioicons

  A library of free open source icons for science illustrations in biology and chemistry

  Language:Vue1.4k174978

• MultiQC/MultiQC

  Aggregate results from bioinformatics analyses across many samples into a single report.

  Language:JavaScript1.2k351.7k606

• HazyResearch/meerkat

  Creative interactive views of any dataset.

  Language:Python830158343

• arvkevi/kneed

  Knee point detection in Python :chart_with_upwards_trend:

  Language:Python745116074

• jeffalstott/powerlaw

  Language:Jupyter Notebook6083580134

• Edinburgh-Genome-Foundry/DnaFeaturesViewer

  :eye: Python library to plot DNA sequence features (e.g. from Genbank files)

  Language:Python607197493

• opensouls/terminal-copilot

  A smart terminal assistant that helps you find the right command.

  Language:Python57273243

• konstantint/matplotlib-venn

  Area-weighted venn-diagrams for Python/matplotlib

  Language:Jupyter Notebook527117268

• ericmjl/nxviz

  Visualization Package for NetworkX

  Language:Python459237587

• webermarcolivier/statannot

  add statistical annotations (pvalue significance) on an existing boxplot generated by seaborn boxplot

  Language:Jupyter Notebook396105874

• NVIDIA-Genomics-Research/rapids-single-cell-examples

  Examples of single-cell genomic analysis accelerated with RAPIDS

  Language:Jupyter Notebook327173469

• saketkc/pysradb

  Package for fetching metadata and downloading data from SRA/ENA/GEO

  Language:Python3161313752

• DingWB/PyComplexHeatmap

  PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)

  Language:Python30367532

• Boyle-Lab/Blacklist

  Application for making ENCODE Blacklists

  Language:C++27784139

• scverse/muon

  muon is a multimodal omics Python framework

  Language:Python2221411031

• theislab/diffxpy

  Differential expression analysis for single-cell RNA-seq data.

  Language:Python194718823

• pinellolab/scATAC-benchmarking

  Benchmarking computational single cell ATAC-seq methods

  Language:Jupyter Notebook17881039

• andrewcharlesjones/plottify

  A simple matplotlib wrapper that automatically scales font sizes, scatter point sizes, and line widths to be proportional to figure size.

  Language:Python108126

• harbourlab/SparK

  Publication quality NGS track plotting

  Language:Python10851620

• wckdouglas/diffexpr

  Porting DESeq2 into python via rpy2

  Language:Python6821021

• ParkerLab/ataqv

  A toolkit for QC and visualization of ATAC-seq results.

  Language:C++6682910