mtisza1
Assistant professor at Baylor College of Medicine. Formerly, Johns Hopkins/NIH. > Virus Discovery, Microbial Genomics, DNA Methylation
Baylor College of MedicineHouston, TX, USA
Pinned Repositories
EsViritu
Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
Marker-MAGu
Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes
Cenote-Taker
DEPRECATED: Use Cenote-Taker 3 instead
Cenote-Taker2
Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)
Cenote-Taker3
Discover and annotate the virome
Cenote_Unlimited_Breadsticks
DEPRECATED: Discover divergent virus sequences, prune flanking cellular sequences, make basic report
DNA_methylase_finder
Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes
influenza_a_serotype
assign sequencing reads to influenza A serotypes
teddy_vir_bac_marker_gene
Scripts for reproducing TEDDY virome/bacteriome analyses and figures
VAPiD
VAPiD: Viral Annotation and Identification Pipeline
mtisza1's Repositories
mtisza1/Cenote-Taker2
Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)
mtisza1/Cenote-Taker3
Discover and annotate the virome
mtisza1/Cenote-Taker
DEPRECATED: Use Cenote-Taker 3 instead
mtisza1/DNA_methylase_finder
Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes
mtisza1/Cenote_Unlimited_Breadsticks
DEPRECATED: Discover divergent virus sequences, prune flanking cellular sequences, make basic report
mtisza1/influenza_a_serotype
assign sequencing reads to influenza A serotypes
mtisza1/teddy_vir_bac_marker_gene
Scripts for reproducing TEDDY virome/bacteriome analyses and figures
mtisza1/VAPiD
VAPiD: Viral Annotation and Identification Pipeline
mtisza1/bioconda-recipes
Conda recipes for the bioconda channel.
mtisza1/metscale
MetScale: snakemake workflows to scale metagenome analyses