mtisza1
Assistant professor at Baylor College of Medicine. Formerly, Johns Hopkins/NIH. > Virus Discovery, Microbial Genomics, DNA Methylation
Baylor College of MedicineHouston, TX, USA
mtisza1's Stars
wesnoth/wesnoth
An open source, turn-based strategy game with a high fantasy theme.
YuLab-SMU/ggtree
:christmas_tree:Visualization and annotation of phylogenetic trees
schneebergerlab/plotsr
Tool to plot synteny and structural rearrangements between genomes
rrwick/Filtlong
quality filtering tool for long reads
labgem/PPanGGOLiN
Build a partitioned pangenome graph from microbial genomes
apcamargo/genomad
geNomad: Identification of mobile genetic elements
gbouras13/pharokka
fast phage annotation program
rpetit3/dragonflye
:dragon: :fly: Assemble bacterial isolate genomes from Nanopore reads
andersen-lab/Freyja
Depth-weighted De-Mixing
JEFworks-Lab/STdeconvolve
Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data
deprekate/PHANOTATE
PHANOTATE: a tool to annotate phage genomes.
fanglab/nanodisco
nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.
rcs333/VAPiD
VAPiD: Viral Annotation and Identification Pipeline
padlocbio/padloc
Locate antiviral defence systems in prokaryotic genomes
thackl/proovframe
frame-shift correction for long-read (meta)genomics
linsalrob/ProphagePredictionComparisons
Comparisons of multiple different prophage predictions
wanyuac/BINF_toolkit
Handy scripts for routine bioinformatic analysis
cmmr/EsViritu
Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
Dmitry-Antipov/viralFlye
viralFlye pipeline
edzuf/CrisprOpenDB
SegataLab/viromeqc
ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichment score for each virome. The score is calculated with respect to the expected prokaryotic markers abundances in reference metagenomes
mtisza1/Cenote-Taker
DEPRECATED: Use Cenote-Taker 3 instead
FredHutch/gig-map
Build a map of genes present across a set of microbial genomes
FredHutch/octapus
Bacterial Operon Finder for Functional Organization
NCBI-Codeathons/Virus_Graphs
Making Representative Genome Graphs from Eukaryotic Viruses and Phages
bmill3r/EpiClass
Optimizing and predicting performance of DNA methylation biomarkers using sequence methylation density information.
BUCK-LCO-NCI/DivProt
A protein secondary-structure alignment tool for determining the relatedness of highly DIVergent PROTeins
BUCK-LCO-NCI/VirConTaxa
Snakemake pipeline for the taxonomic annotation and quantification of de novo assembled contigs with a focus on dsDNA viruses