mwang87/MassQueryLanguage
The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry centric fashion.
PythonMIT
Issues
- 0
[bug] `TypeError` when `"selectedIon"` "charge state" is `None` during integer coercion
#248 opened by ometa-evan - 0
`"pepmass"` KeyError with `matchms` versions >0.22
#245 opened by ometa-evan - 1
Python API/CLI does not include precmz or SMILES/compound name in results_df
#244 opened by j-a-dietrich - 0
[Documentation] Link to GNPS Conversion documentation
#222 opened by mwang87 - 0
Even and Odd functions for peaks in a spectrum
#236 opened by mwang87 - 4
feature request: conda package for massql
#235 opened by timosachsenberg - 1
How to query Thermo AIF MS2 data?
#238 opened by yguitton - 3
MS1 precursor ion/s with 34S isotope pattern
#213 opened by Mattesimone - 0
[Engine] Positve and Negative polarity not respected when loading GNPS library JSON
#225 opened by mwang87 - 0
[Dash] Make a search button for query updates
#224 opened by mwang87 - 0
- 0
- 1
Translate from MotifDB
#187 opened by mwang87 - 1
[Bug] Query does not seem to respect INTENSITYVALUE
#205 opened by mwang87 - 0
[Bug] Workflow Make sure output filenames are truncated so they are not too long
#203 opened by mwang87 - 0
- 0
[Cleanup] Debug setup for Lark 1.0
#199 opened by mwang87 - 2
- 0
- 0
[Dashboard] Show the full compound name on hover
#196 opened by mwang87 - 0
[Versions] Pin versions of requirements.txt
#192 opened by mwang87 - 0
Support scanmaxintensity function
#189 opened by mwang87 - 0
[Bug] Sciex Does not Have Scan Numbers
#188 opened by mwang87 - 0
Supporting CDF Format
#186 opened by mwang87 - 3
[Bug] FBMN Querying
#181 opened by mwang87 - 2
[Bug] Missing Result
#180 opened by mwang87 - 0
[CMD] Add option to specify maximum file size
#177 opened by mwang87 - 0
[Language] Negation
#170 opened by mwang87 - 0
Link to Falcon Workflow after MassQL
#152 opened by mwang87 - 0
- 0
[Caching] Using Parquet as caching option
#164 opened by mwang87 - 0
- 0
[Language] Enabling Defect as qualifier
#156 opened by mwang87 - 0
[Workflow] Trace output needs to be server side
#159 opened by mwang87 - 0
[Extraction] Need to extract to multiple files with suffixes if too many results
#160 opened by mwang87 - 1
[Testing] Testing with Mobility
#157 opened by mwang87 - 0
[Logging] Revamp logging to make it easier to have it, especially on commandline option
#149 opened by mwang87 - 1
[Tests] Add proteomics data test case
#147 opened by mwang87 - 0
[Tests] Add Glycan tests
#148 opened by mwang87 - 1
Error on MALDI (maybe LC) if no MS2
#110 opened by chasemc - 0
Query Formatter
#142 opened by mwang87 - 4
Remove case sensitivity
#121 opened by robinschmid - 0
Add condition if file missing/unsupported format
#116 opened by chasemc - 0
Even/Odd for X
#134 opened by mwang87 - 1
[Bug] Query Failure
#117 opened by mwang87 - 5
MALDI and MSQL
#119 opened by chasemc - 2
Add global filters
#122 opened by robinschmid - 2
Possible inconsistencies
#125 opened by robinschmid - 0
[Bug] Errors in Extraction
#126 opened by mwang87 - 0
Isotope pattern
#124 opened by robinschmid