Pinned Repositories
adotto-smk
A snakemake based pipeline to build Adotto TR databases
engineering-bio-lacI-landscape
galaxy-hackathon-2014
Instructions to add a tool for using BAYSIC in galaxy using Docker for installing dependencies
genomic_purity
characterization of test material purity using whole genome sequencing data
giab-data-readmes
repo for collaborative drafting and tracking READMEs for GIAB project
giab-hg002-ccs
giab-ont-ul-pipeline
Snakemake pipeline for processing ultra-long ONT datasets.
giab-shiny-portal
a shiny app based data portal for querying metadata for publicly available GIAB data.
MGTST-Manuscript
tr-qc-tool
bioinformatic qc tool for evaluating repeat annotations
nate-d-olson's Repositories
nate-d-olson/adotto-smk
A snakemake based pipeline to build Adotto TR databases
nate-d-olson/giab-ont-ul-pipeline
Snakemake pipeline for processing ultra-long ONT datasets.
nate-d-olson/engineering-bio-lacI-landscape
nate-d-olson/giab-data-readmes
repo for collaborative drafting and tracking READMEs for GIAB project
nate-d-olson/giab-shiny-portal
a shiny app based data portal for querying metadata for publicly available GIAB data.
nate-d-olson/tr-qc-tool
bioinformatic qc tool for evaluating repeat annotations
nate-d-olson/amazon-genomics-cli
nate-d-olson/bioconda-recipes
Conda recipes for the bioconda channel.
nate-d-olson/changeseq-analysis
nate-d-olson/cloud9-cdk-stack
cdk code to deploy a cloud9 environment
nate-d-olson/defrabb
Development Environment For Assembly Based Benchmarks
nate-d-olson/genosim
nate-d-olson/giab-data-portal-v0.1
Data tables and scripts for initial (spreadsheet) version of the GIAB data portal.
nate-d-olson/giab-HiFi-somatic-WDL
Tumor-normal variant calling workflow using HiFi reads - modification for other references
nate-d-olson/giab-truvari-pipe
nate-d-olson/giab-tumor-normal-data
nate-d-olson/giabShinyPortal
GIAB Sirius Portal
nate-d-olson/hap.py
Haplotype VCF comparison tools
nate-d-olson/HiFi-human-WGS-WDL-GIAB
Modification of pipeline for GIAB data processing
nate-d-olson/Jenn-Li-NIST2023
nate-d-olson/laytr
Library for variant benchmarking stratification
nate-d-olson/learn_shinytest2
nate-d-olson/mosaic-benchmark-exploratory-analysis
Initial analysis characterizing low frequency variants in GIAB HG002.
nate-d-olson/ndo-foam
nate-d-olson/RGTM10169
Information for RGTM 10169 (SARS-CoV-2 Synthetic RNA)
nate-d-olson/rtgm10169_manuscript
nate-d-olson/SeqSleuth
nate-d-olson/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
nate-d-olson/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
nate-d-olson/truvari
Structural variant toolkit for VCFs