naz14's Stars
bokeh/bokeh
Interactive Data Visualization in the browser, from Python
graphite-project/graphite-web
A highly scalable real-time graphing system
dreamRs/esquisse
RStudio add-in to make plots interactively with ggplot2
theislab/single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
jokergoo/ComplexHeatmap
Make Complex Heatmaps
tompollard/phd_thesis_markdown
Template for writing a PhD thesis in Markdown
mdozmorov/scRNA-seq_notes
A list of scRNA-seq analysis tools
imankgoyal/NonDeepNetworks
Official Code for "Non-deep Networks"
rstudio/bslib
Tools for theming Shiny and R Markdown via Bootstrap 3, 4, or 5.
kevinblighe/PCAtools
PCAtools: everything Principal Components Analysis
bioFAM/MOFA2
Multi-Omics Factor Analysis
Oshlack/splatter
Simple simulation of single-cell RNA sequencing data
JohnCoene/firebase
Google FIrebase for shiny
stemangiola/tidyseurat
Seurat meets tidyverse. The best of both worlds.
theislab/kBET
An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
hbctraining/Intro-to-rnaseq-hpc-salmon-flipped
Introduction to bulk RNA-seq
OSGA-OPAR/quant-genetics-webinars
Quantitative Genetics Tools for Mapping Trait Variation to Mechanisms, Therapeutics, and Interventions - Webinar Series
SamBuckberry/RUN-WGCNA
Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)
genedisco/genedisco-starter
The starter repository for submissions to the GeneDisco challenge for optimized experimental design in genetic perturbation experiments.
AstraZeneca/Omicsfold
Multi-omics data normalisation, model fitting and visualisation.
PengYuMaize/Yu2021NaturePlants
Scripts for WGCNA network analysis and correlation with microbial taxonomy traits
hidelab/diffcoexp
Differential coexpression analysis
smith-chem-wisc/MetaNetwork
atenyi/ChainRank
ChainRank is a bioinformatical tool aimed to prioritize and contextualize biological subnetworks, it is based on a chain search method
LuChenLab/40Tcells
Paired rRNA-depleted and polyA-selected RNA sequencing from primary CD4 T cell of 40 healthy individuals with multi-omics data
WilfongGuo/Benchmark_control
This work comprehensively provides performance comparisons of 16 Sample-Specific network Control (SSC) analysis frameworks based on the combination of four sample-specific network reconstruction methods and four representative structural control methods corresponding to the two steps of SSC on the real-world biological data.
smukher2/GithubScientificReportsGlioblastomaStemApril2020
twang15/PlatoAcademy
Free thoughts live
ahe3/brain_networks
Leveraging Co-expression Networks to Identify Functional Regular Variants in Human Brain & Impact in Diseases
eltonjrv/bioinfo.scripts
ad hoc scripts (mostly PERL) for usage in bioinformatics tasks