Pinned Repositories
229-E-Corona-Genome-Analysis
Genome Analysis of 229-E COVID-19 strain
ACAM
This is the R package ACAM for cell annotation.
ACAMdata
alexa-seq
ALEXA-seq - alternative expression analysis by RNA-seq
content
Official content for Harvard CS109
nbahti's Repositories
nbahti/bioinformatics-workshop
RNA-seq Tutorial
nbahti/CIDR
Clustering through Imputation and Dimensionality Reduction
nbahti/clustering-nips-2017
Code for "Is Simple Better?: Revisiting Simple Generative Models for Unsupervised Clustering" - Bayesian Deep Learning Workshop (NIPS 2017)
nbahti/D-GEX
Deep learning for gene expression inference
nbahti/DCEC
nbahti/deep-representations-clustering
This repository is an attempt to replicate the results for the paper: "Learning Deep Representations for Graph Clustering".
nbahti/DeepEmbeddedClustering
Tensorflow implementation of Deep Embedded Clustering (DEC) for unsupervised learning
nbahti/DGCA
Differential Gene Correlation Analysis
nbahti/Equine_lncRNA
equine lncRNA discovery pipeline
nbahti/GMVAE
Deep Unsupervised Clustering with Gaussian Mixture Variational Autoencoders
nbahti/IDEC
nbahti/Image_Crawling
Image crawling with Python
nbahti/JULE.torch
Torch code for our CVPR 2016 paper "Joint Unsupervised LEarning of Deep Representations and Image Clusters"
nbahti/manifold-clustering-algorithm
The source code to cluster multiple manifolds with intersection
nbahti/Microscope
ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps
nbahti/MixRF
A random-forest-based approach for imputing clustered incomplete data
nbahti/mycodes
nbahti/Quantile_Normalize
This function implements quantile normalization in python matrix
nbahti/random-forest
Implementation of a Random Forest classifier in both Python and Scala
nbahti/Random-Forest-Classifier
A very simple Random Forest Classifier implementation in python.
nbahti/rfunctions
a set of R functions that I find useful
nbahti/SparseDC
:exclamation: This is a read-only mirror of the CRAN R package repository. SparseDC — Implementation of SparseDC Algorithm
nbahti/StemID
Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.
nbahti/switchde
Inference of switch-like differential expression along single-cell trajectories
nbahti/t-SNE-tutorial
A tutorial on the t-SNE learning algorithm
nbahti/tflearn-vae
tflearn implementation of variational autoencoder
nbahti/vae-celebA
Variational auto-encoder trained on celebA . All rights reserved.
nbahti/vae-clustering
Unsupervised clustering with (Gaussian mixture) VAEs
nbahti/VASC
Variational autoencoder for single cell RNA-seq datasets
nbahti/watershed
A Python implementation of the watershed image segmentation algorithm