nbahti

229-E-Corona-Genome-Analysis

Genome Analysis of 229-E COVID-19 strain

ACAM

This is the R package ACAM for cell annotation.

ACAMdata

alexa-seq

ALEXA-seq - alternative expression analysis by RNA-seq

APEC

Single cell epigenomic clustering based on accessibility pattern

content

Official content for Harvard CS109

nbahti/ACAM

This is the R package ACAM for cell annotation.

nbahti/ACAMdata

nbahti/awesome-deep-learning-single-cell-papers

nbahti/copykat

nbahti/covid-sequence-analysis-workflow

nbahti/COVID19-protein-sequence-analysis

nbahti/ePat

nbahti/FastRNA

FastRNA: Single-cell analysis of atlas-scale data on a laptop

nbahti/GBmap

Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolution) and how to produce the figures.

nbahti/ggsignif

Easily add significance brackets to your ggplots

nbahti/Libra

nbahti/MAGIC

MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

nbahti/multinichenetr

MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

nbahti/muon

muon is a multimodal omics Python framework

nbahti/muscat

Multi-sample multi-group scRNA-seq analysis tools

nbahti/popsicleR

popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and detailed analysis of single cell RNA-seq data.

nbahti/presto

Fast Wilcoxon and auROC

nbahti/r2u

CRAN as Ubuntu Binaries

nbahti/sc-type

nbahti/scCATCH

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

nbahti/scCATCH_performance_comparison

The source code and results of performance comparison on the detail of the process among scCATCH, CellAssign, Garnett, SingleR, scMap and CHETAH, and CellMatch database

nbahti/scMiko

R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-cell analytic work flows.

nbahti/scPipeline

Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports

nbahti/seurat-wrappers

Community-provided extensions to Seurat

nbahti/singleCellHaystack

Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).

nbahti/STAR

RNA-seq aligner

nbahti/tenx

Pipelines for the analysis of 10x single-cell RNA-sequencing data

nbahti/testpipeline

A small example pipeline used to test new nf-core infrastructure and common code.

nbahti/tools

Python package with helper tools for the nf-core community.

nbahti/WebPlotDigitizer

HTML5 based online tool to extract numerical data from plot images.