nbrosse's Stars
mosaicml/llm-foundry
LLM training code for Databricks foundation models
pachterlab/gget
š§¬ gget enables efficient querying of genomic reference databases
TileDB-Inc/TileDB
The Universal Storage Engine
openproblems-bio/openproblems-v2
Formalizing and benchmarking open problems in single-cell genomics
fatiando/pooch
A friend to fetch your data files
pdm-project/pdm
A modern Python package and dependency manager supporting the latest PEP standards
jdx/mise
dev tools, env vars, task runner
lucidrains/alphafold3-pytorch
Implementation of Alphafold 3 in Pytorch
HigherOrderCO/Bend
A massively parallel, high-level programming language
pytorch/torchtitan
A native PyTorch Library for large model training
astral-sh/rye
a Hassle-Free Python Experience
astral-sh/uv
An extremely fast Python package installer and resolver, written in Rust.
baker-laboratory/RoseTTAFold-All-Atom
KyGao/awesome-docking
An awesome & curated list of docking papers
karpathy/llm.c
LLM training in simple, raw C/CUDA
AlexDuvalinho/geometric-gnns
List of Geometric GNNs for 3D atomic systems
writing-resources/awesome-scientific-writing
:keyboard: A curated list of awesome tools, demos and resources to go beyond LaTeX
astral-sh/ruff
An extremely fast Python linter and code formatter, written in Rust.
thejonaslab/vonmises-icml-2023
MDAnalysis/mdanalysis
MDAnalysis is a Python library to analyze molecular dynamics simulations.
leeping/geomeTRIC
Geometry optimization code that includes the TRIC coordinate system
soedinglab/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
steineggerlab/foldseek
Foldseek enables fast and sensitive comparisons of large structure sets.
swansonk14/admet_ai
Training and prediction scripts for Chemprop models trained on ADMET datasets
pylelab/USalign
Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
THGLab/LP-PDBBind
dvmazur/mixtral-offloading
Run Mixtral-8x7B models in Colab or consumer desktops
torchmd/torchmd-net
Training neural network potentials
G-Taxonomy-Workgroup/GPSE
Graph Positional and Structural Encoder
atong01/conditional-flow-matching
TorchCFM: a Conditional Flow Matching library