Laboratory of Neurogenetics - National Inst. of Aging - NIH
Repositories for data and code from the Laboratory of Neurogenetics. For any questions or concerns, contact Mike Nalls - mike[at]datatecnica[dot]com
Pinned Repositories
ADRD_Brain_Aging
ADRD Brain Aging projects
APOE_genotypes
Short script to identify APOE genotypes per sample using PLINK and Python
GenoML_IPDGC
This is a small workshop put together to demonstrate how GenoML works - presented at the IPDGC conference
GWAS-pipeline
This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GWAS.
GWAS_locus_browser
HLA_haplotypes_UKB_PD
Investigation of HLA haplotypes in the UK Biobank vs Parkinson's disease
LRRK2-microglia-eQTL
LRRK2_conditional_v3
talks
A repository to store recent talks from LNG members.
UKbiobank_SNCA
UK Biobank SNCA scripts and pipelines
Laboratory of Neurogenetics - National Inst. of Aging - NIH's Repositories
neurogenetics/HLA_haplotypes_UKB_PD
Investigation of HLA haplotypes in the UK Biobank vs Parkinson's disease
neurogenetics/genetic-risk-score
neurogenetics/meta5
neurogenetics/gcp-pipes-utils-examples
Examples notebooks, scripts, wdls, yamls, pipelines, etc for running stuff on GCP
neurogenetics/ALSBurden2040
NATURE COMMUNICATIONS | 7:12408 | DOI: 10.1038/ncomms12408
neurogenetics/cellxgene
Code to convert single cell Rdata files to h5ad files for viewing in cellxgene
neurogenetics/Clinical-Trial-Outcomes
Code and analyses associated with the manuscript "Genetic variability and potential effects on clinical trial outcomes: perspectives in Parkinson’s disease"
neurogenetics/GWAS-follow-up-analyses
neurogenetics/PDpheno_by_sex
neurogenetics/Peru_course
This is the course-code for ISIA 2019 Workshop 1
neurogenetics/plink
Standard PLINK commands commonly used
neurogenetics/Population-Predictive-Model-InCHIANTI-Study
Supplementary Methods, Statistical and Genomic Analyses for the InCHAINTI Prediction Model
neurogenetics/seminar