Laboratory of Neurogenetics - National Inst. of Aging - NIH
Repositories for data and code from the Laboratory of Neurogenetics. For any questions or concerns, contact Mike Nalls - mike[at]datatecnica[dot]com
Pinned Repositories
ADRD_Brain_Aging
ADRD Brain Aging projects
Autosomal-sex-differences-PDv2
Investigation whether there are autosomal sex differences in risk for PD
GenoML_IPDGC
This is a small workshop put together to demonstrate how GenoML works - presented at the IPDGC conference
GWAS-pipeline
This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GWAS.
GWAS_locus_browser
HLA_haplotypes_UKB_PD
Investigation of HLA haplotypes in the UK Biobank vs Parkinson's disease
LRRK2-microglia-eQTL
LRRK2_conditional_v3
talks
A repository to store recent talks from LNG members.
UKbiobank_SNCA
UK Biobank SNCA scripts and pipelines
Laboratory of Neurogenetics - National Inst. of Aging - NIH's Repositories
neurogenetics/GWAS-pipeline
This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GWAS.
neurogenetics/UKbiobank_SNCA
UK Biobank SNCA scripts and pipelines
neurogenetics/LRRK2-microglia-eQTL
neurogenetics/ADRD_Brain_Aging
ADRD Brain Aging projects
neurogenetics/HLA_haplotypes_UKB_PD
Investigation of HLA haplotypes in the UK Biobank vs Parkinson's disease
neurogenetics/LRRK2_conditional_v3
neurogenetics/talks
A repository to store recent talks from LNG members.
neurogenetics/APOE_genotypes
Short script to identify APOE genotypes per sample using PLINK and Python
neurogenetics/Autosomal-sex-differences-PDv2
Investigation whether there are autosomal sex differences in risk for PD
neurogenetics/GenoML_IPDGC
This is a small workshop put together to demonstrate how GenoML works - presented at the IPDGC conference
neurogenetics/GWAS_locus_browser
neurogenetics/amppd_wb_eqtl
AMP-PD Whole-Blood eQTL analyses
neurogenetics/chrY_haplogroups_PD
project analyzing Y chromosome variants, genes and haplogroups in Parkinson's disease.
neurogenetics/NBIA_PD
neurogenetics/PD_STR_imputation
Imputing STR calls from PD SNP based data using the Gymrek STR 1kg reference panel
neurogenetics/Xenium_Line61_spatial
neurogenetics/gcp-pipes-utils-examples
Examples notebooks, scripts, wdls, yamls, pipelines, etc for running stuff on GCP
neurogenetics/Bidirectional_PD_Smell
neurogenetics/clusterFiles
Growing repository for cluster files of neurodegenerative disease focused arrays developed by Illumina and the LNG.
neurogenetics/Detection-of-Frailty-with-Biomarkers-A-Population-Health-Study
Supplemental Documents and Analysis Code
neurogenetics/Familial-Myasthenia-Gravis
Associated calculations for the paper "New evidence for a genetic contribution to myasthenia gravis"
neurogenetics/Gaucher_PD_GRS_modifiers
neurogenetics/GWAS-projections
neurogenetics/LNG_posters
neurogenetics/LNG_utils
Utility Functions & Scripts for Analysis in NIH HPC
neurogenetics/Multiple_Phenotype_LocusZoom
neurogenetics/PD-BURDEN
neurogenetics/PD-vs-MS
neurogenetics/PD_SV_SRS
GATK-SV manuscript analysis
neurogenetics/PDpheno_by_sex