Can influenza H5 datasets be available for nextclade CLI
Closed this issue · 3 comments
Hi, I noticed that your webtool has three different datasets available for influenza H5; however these datasets are not available on the CLI version of nextclade. Is it possible to make the influenza H5 datasets available for CLI use? Thanks!
Can you please double check if the output of
nextclade dataset list --only-namesincludes
community/moncla-lab/iav-h5/ha/2.3.4.4
community/moncla-lab/iav-h5/ha/all-clades
community/moncla-lab/iav-h5/ha/2.3.2.1
?
If so, then these are the H5 datasets.
If not, there is a problem we'll need to investigate. What is your
nextclade --version
?
In the meantime, as a backup solution you can also try to get the datasets from our data repo:
- either from
data/directory https://github.com/nextstrain/nextclade_data/tree/master/data - or from "assets" on "releases" page: https://github.com/nextstrain/nextclade_data/releases
Thanks Ivan for the response! I think I was using an older version of the nextclade docker. When I used the latest version (3.8.2), I see the datasets for H5!
@molly-hetheringtonrauth Glad it worked! Don't hesitate to open a new issue if there's problems.