nf-core/proteinfold

Issues

• Installation issues - proteinfold

  #171 opened 2 months ago by pnatarajan9
  6

• Database uniref30_2202_db does not exist while running colabfold local

  #121 opened 4 months ago by nash73b91203005
  4

• DB paths not being resolved properly

  #103 opened 3 months ago by drpatelh
  4

• Add mention to the AWS Open Data Sponsorship Program in readme and update licenses in s3

  #150 opened 3 months ago by JoseEspinosa
  1

• Add TCRdock for TCR:pMHC prediction

  #124 opened 4 months ago by eliasball
  0

• RuntimeError: HHblits failed. Unrecognized HMM file format in '468479486'

  #140 opened 4 months ago by asmaali98
  2

• Podman and shifter profiles not working

  #142 opened 4 months ago by Qiangong2
  6

• Update DBs

  #148 opened 4 months ago by JoseEspinosa
  2

• Add params.skip_multiqc

  #130 opened 5 months ago by JoseEspinosa
  1

• Create test profile for download processes

  #145 opened 5 months ago by JoseEspinosa
  1

• Only first item in samplesheet processed when no db parameter provided

  #144 opened 5 months ago by JoseEspinosa
  1

• Update modules to last version

  #147 opened 5 months ago by JoseEspinosa
  1

• Use nf-schema for samplesheet parsing

  #141 opened 6 months ago by adamrtalbot
  2

• Implement esmfold small tests

  #131 opened 6 months ago by JoseEspinosa
  1

• DOWNLOAD_PDBMMCIF process breaks

  #108 opened 6 months ago by JoseEspinosa
  1

• Throw message error when profile conda is used

  #115 opened 6 months ago by JoseEspinosa
  1

• Add background to tubemap svg

  #104 opened 6 months ago by robsyme
  1

• SIF files causing AlphaFold container to increase by 7-8GB and causing failures/increased pull costs.

  #135 opened 6 months ago by ajfriedman18
  1

• Colabfold database files missing

  #137 opened 6 months ago by Madhumitha0206
  1

• DBs for esmfold full test was empty

  #113 opened a year ago by JoseEspinosa
  1

• Add checksums validation for DBs files

  #107 opened a year ago by JoseEspinosa
  1

• Could not load dynamic library 'libcuda.so.1'

  #102 opened a year ago by Nicobouch
  1

• colabfold - No module named 'openmm'

  #99 opened a year ago by Nicobouch
  5

• PDBMMCIF download error

  #96 opened a year ago by Nicobouch
  8

• Add OpenFold workflow

  #98 opened a year ago by athbaltzis
  0

• Issue with excessive symlinking

  #88 opened a year ago by multimeric
  8

• Add ESMFold workflow

  #83 opened a year ago by athbaltzis
  0

• Integrate Jalview for the visualisation of AlphaFold2 and Colabfold results

  #86 opened 2 years ago by athbaltzis
  1

• Update AlphaFold2 version

  #84 opened a year ago by athbaltzis
  0

• Update ColabFold version

  #85 opened a year ago by athbaltzis
  0

• when colabfold_db is initialized no params directory is created

  #49 opened a year ago by rjpbonnal
  5

• Add Omegafold workflow

  #32 opened 2 years ago by kenibrewer
  0

• Update documentation with recommendations for distributed file systems

  #68 opened 2 years ago by JoseEspinosa
  0

• Populate multiqc report

  #35 opened 2 years ago by JoseEspinosa
  0

• [colabfold] supporting multiple params directory when --mode is colabfold_local

  #55 opened 2 years ago by rjpbonnal
  0

• Get rid of custom configuration

  #36 opened 2 years ago by JoseEspinosa
  3

• wrong path for local colabfold_db directories envdb and uniref30

  #50 opened 2 years ago by rjpbonnal
  0

• Colabsearch when linking files multiple versions of versions.yml are present

  #46 opened 2 years ago by rjpbonnal
  0

• ColabSearch input db oder is inverted

  #47 opened 2 years ago by rjpbonnal
  1

• colabfold, MMSEQS_TSV2EXPROFILEDB creation of versions.yml in the wrong place

  #44 opened 2 years ago by rjpbonnal
  1

• alphafold/uniclust30 contains a subdirectory which is not linked at runtime

  #42 opened 2 years ago by rjpbonnal
  0

• Add modules version reporting

  #24 opened 2 years ago by JoseEspinosa
  0

• Parse failed with pdb_seqres.txt

  #39 opened 2 years ago by rjpbonnal
  0

• Bug when manually specifying the path to AF2 dbs and params

  #37 opened 2 years ago by athbaltzis
  0

• Create a local aria2 module

  #22 opened 2 years ago by JoseEspinosa
  0

• Download failing due to ssl verification

  #27 opened 2 years ago by ArlindNocaj
  1

• Files missing for pdb_mmcif after download

  #28 opened 2 years ago by ArlindNocaj
  1

• Split colabfold_batch command in localcolabfold.nf into two separate, colabfold_search + colabfold_batch, commands

  #20 opened 2 years ago by nfg-interline
  1

• Add capability for localcolabfold to run vs a locally hosted database (FSx Lustre or local web-server)

  #19 opened 2 years ago by nfg-interline
  0

• Make available a full-sized dataset to run test_full

  #17 opened 2 years ago by JoseEspinosa
  1