nhejazi/biotmle

Issues

• `SummarizedExperiment` row names don't propagate to `modtest_ic()` output

  #78 opened 3 years ago by PhilBoileau
  1

• parallelization is a dumpster fire

  #76 opened 3 years ago by nhejazi
  1

• Warning on 'Sequential evaluation is strongly discouraged. Proceed with caution.'?

  #71 opened 5 years ago by HenrikBengtsson
  2

• Bioc Check Failure

  #70 opened 5 years ago by nhejazi
  1

• CIs based on tail bounds

  #67 opened 5 years ago by nhejazi
  0

• Simultaneous CIs

  #65 opened 6 years ago by nhejazi
  0

• Error in eif

  #62 opened 6 years ago by dcpattie
  1

• Toptable: Error: $ operator not defined for this S4 class

  #63 opened 6 years ago by dcpattie
  1

• Error in superheat:

  #61 opened 6 years ago by dcpattie
  3

• Allow specification of functional forms for g and Q fits

  #59 opened 6 years ago by nhejazi
  1

• Outcomes method for biomarkers

  #30 opened 6 years ago by nhejazi
  4

• Backend package transition: drtmle

  #36 opened 6 years ago by nhejazi
  1

• BioC 3.8 - BiocCheck

  #56 opened 6 years ago by nhejazi
  0

• Tibble problems in heatmap routine

  #53 opened 6 years ago by nhejazi
  0

• Robust variance-moderated testing of linear model parameters

  #48 opened 6 years ago by nhejazi
  1

• Wishlist for Bioc3.8 Release

  #37 opened 6 years ago by nhejazi
  1

• Implementing supervised distance matrices

  #47 opened 6 years ago by nhejazi
  1

• interpretation of ATE "fold change"

  #25 opened 6 years ago by nhejazi
  0

• succinctly convey analysis results

  #38 opened 6 years ago by nhejazi
  1

• biomarkertmle fails on data transposition

  #42 opened 6 years ago by BiaoLiu2017
  3

• revdep check on wesanderson

  #39 opened 6 years ago by karthik
  2

• Workflow Article

  #11 opened 7 years ago by nhejazi
  1

• Package hex sticker for BioC

  #19 opened 7 years ago by nhejazi
  3

• BioC 3.6 Package Maintenance

  #28 opened 7 years ago by nhejazi
  3

• Parallelization via BiocParallel

  #18 opened 7 years ago by nhejazi
  2

• Parallelization via future

  #31 opened 7 years ago by nhejazi
  1

• Using futures with BiocParallel

  #32 opened 7 years ago by nhejazi
  1

• appveyor build exits with code 5

  #29 opened 7 years ago by nhejazi
  5

• unit testing

  #23 opened 7 years ago by nhejazi
  5

• adding open source standards

  #26 opened 7 years ago by nhejazi
  1

• Technical Replicates Functionality

  #20 opened 7 years ago by courtneyschiffman
  2

• Testing IC estimates

  #17 opened 7 years ago by nhejazi
  4

• What is the point of modtestOut?

  #21 opened 7 years ago by nhejazi
  1

• Limma Integration for RNA-seq

  #16 opened 7 years ago by nhejazi
  1

• TODO for Bioconductor

  #15 opened 7 years ago by nhejazi
  1

• Switch heatmap to use superheat?

  #14 opened 8 years ago by nhejazi
  2

• Article Submission - JOSS

  #2 opened 8 years ago by nhejazi
  1

• TODO

  #1 opened 8 years ago by wilsoncai1992
  1

• preliminary R package

  #4 opened 8 years ago by nhejazi
  0

• example Illumina 2007 data set

  #3 opened 8 years ago by nhejazi
  2