Pinned Repositories
cytomapper
R package for visualization of highly multiplexed imaging data
cytomapper_publication
See static website at https://bodenmillergroup.github.io/cytomapper_publication/
demos
Repository containing demonstrations of lab software
IMCDataAnalysis
R based workflow for multiplexed imaging data
imcRtools
An R package for handling and analysing imaging mass cytometry data
BASiCS
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version
bbRtools
R tools for the Bodenmiller lab
GithubTest
Test repository for Github teaching
MultiplexedImageAnalysis2023
Thesis
Latex scripts to compile my PhD thesis
nilseling's Repositories
nilseling/Thesis
Latex scripts to compile my PhD thesis
nilseling/GithubTest
Test repository for Github teaching
nilseling/MultiplexedImageAnalysis2023
nilseling/BASiCS
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version
nilseling/bbRtools
R tools for the Bodenmiller lab
nilseling/Bioc_image_tests
Random scripts to test handling of bioimage file formats as part of Bioconductor.
nilseling/BiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
nilseling/BTM
Teaching material for BTM 2016
nilseling/CATALYST
Cytometry dATa anALYsis Tools
nilseling/CommonResources
Common lab resources for processing sequencing data
nilseling/MultiplexedImageAnalysis2022
This repository hosts the scripts to reproduce the analysis presented in the practical session of "Tumors and the immune system 2022 - High dimensional spatial profiling of tumor microenvironment"
nilseling/my_cellprofiler
nilseling/neighbouRhood
Adds an R implementation for the HistoCAT neightbourhood analysis that runs from CellProfiler output.
nilseling/nilseling
nilseling/nilseling.github.io
My personal website at https://nilseling.github.io/
nilseling/useR2021_cytomapper
Repository containing the cytomapper slides presented at useR! 2021