BOLD brain mask derivatives ("desc-brain_mask.nii.gz") are not binarized

[madisoth]

What happened?

"*_desc-brain_mask.nii.gz" functional derivatives in all subjects I've checked are not binarized. The extracted brain area for the mask looks fine.

Confirmed this is the case both with and without --cifti-output, and both with and without multiecho input

May be due to init_func_preproc_wf using the "out_file" of sdcflows BrainExtraction instead of "out_mask" in a couple places.

What command did you use?

nibabies_22.1.3.sif /data /out participant --participant-label <SUB> --age-months 1 \
--derivatives /derivatives \
--cifti-output 91k \
--omp-nthreads 3 \
--resource-monitor \
-vv \
-w /work

What version of NiBabies are you using?

22.1.3

Relevant log output

No response

Add any additional information or context about the problem here.

No response