Pinned Repositories
bayesian-neural-network-blogpost
Building a Bayesian deep learning classifier
bbcontacts
Prediction of beta-strand pairing from direct coupling patterns
binf-scripts
A collection of useful bioinformatics scripts.
Brewery
State-of-the-art ab initio prediction of 1D protein structure annotations
CCMgen
CCMpredPy_master
Python implementation of the CCMpred predictor of residue-residue contacts.
codemirror-textmate
CodeMirror now with Textmate grammars
ConcreteDropout
Code for Concrete Dropout as presented in https://arxiv.org/abs/1705.07832
nitrogenase's Repositories
nitrogenase/Brewery
State-of-the-art ab initio prediction of 1D protein structure annotations
nitrogenase/CCMgen
nitrogenase/codemirror-textmate
CodeMirror now with Textmate grammars
nitrogenase/coniii
Convenient Interface to Inverse Ising (ConIII)
nitrogenase/Convolutional-Generative-Stochastic-Network-for-Protein-Secondary-Structure-Prediction
An implementation for Deep Supervised and Convolutional Generative Stochastic Network for Protein Secondary Structure Prediction, https://arxiv.org/abs/1403.1347
nitrogenase/cu-ssp
Implementation of High Quality Protein Q8 Secondary Structure Prediction by Diverse Neural Network Architectures
nitrogenase/DeepLocalProteinDocking
Placeholder for the publication code
nitrogenase/effectivepython
Effective Python: Second Edition — Source Code and Errata for the Book
nitrogenase/electro
Core code for the paper "A Generative Model For Electron Paths" (https://openreview.net/forum?id=r1x4BnCqKX).
nitrogenase/EVcouplings
Evolutionary couplings from protein and RNA sequence alignments
nitrogenase/getcontacts
Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation
nitrogenase/GREMLIN_CPP
GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
nitrogenase/Machine-learning-for-proteins
Listing of papers about machine learning for proteins.
nitrogenase/ML-From-Scratch
Machine Learning From Scratch. Bare bones NumPy implementations of machine learning models and algorithms with a focus on accessibility. Aims to cover everything from linear regression to deep learning.
nitrogenase/mlss2019-bayesian-deep-learning
MLSS2019 Tutorial on Bayesian Active Learning
nitrogenase/models
Models and examples built with TensorFlow
nitrogenase/neural-processes
nitrogenase/openprotein
A PyTorch framework for prediction of tertiary protein structure
nitrogenase/panopto-downloader-chrome
Chrome extension to batch download videos from Panopto. Tested with the University of Cambridge Panopto website.
nitrogenase/protein-sequence-embedding-iclr2019
Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
nitrogenase/protein-vae
Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
nitrogenase/ProteinSecondaryStructure-CNN
Protein Secondary Structure predictor using Convolutional Neural Networks
nitrogenase/pyGaussDCA
nitrogenase/SingleFile
Web Extension for Firefox/Chrome/MS Edge and CLI tool to save a faithful copy of an entire web page in a single HTML file
nitrogenase/TAPE
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
nitrogenase/TensorFlow-Tutorials
TensorFlow Tutorials with YouTube Videos
nitrogenase/UniRep
UniRep model, usage, and examples.
nitrogenase/Zamboss
Ankidecks fuer 100 Tage Lernplan
nitrogenase/zotero-manubot
Link Zotero to Manubot to quickly generate formatted bibliographies from your Zotero library
nitrogenase/zotero-mas-metadata
A Zotero plugin that adds citation counts from Microsoft Academic to your references.