Pinned Repositories
AgamP4_conservation_score
Conservation score calculated for Anopheles gambiae genome AgamP4.
azimuth
Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency
CRISPResso2
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
decaf-frontend
decaf-frontend-common
escher
Build, view, share, and embed pathway maps.
flask-vuejs-template
Flask + Vue JS Template
guido
CRISPR sgRNA search and evaluation Python package.
guido-old
Guide designer with microhomology predictor for MMEJ
PAM-identification
Scripts and tools used for in silico CRISPR-Cas9 PAM identification.
nkran's Repositories
nkran/guido-old
Guide designer with microhomology predictor for MMEJ
nkran/guido
CRISPR sgRNA search and evaluation Python package.
nkran/CRISPResso2
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
nkran/AgamP4_conservation_score
Conservation score calculated for Anopheles gambiae genome AgamP4.
nkran/azimuth
Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency
nkran/decaf-frontend
nkran/decaf-frontend-common
nkran/escher
Build, view, share, and embed pathway maps.
nkran/flask-vuejs-template
Flask + Vue JS Template
nkran/Genomic_Read_Processing
A nextflow pipeline developed to trim and map genomic reads to the Anopheles gambiae reference genome. This pipeline was originally developed for the Crisanti Lab.
nkran/PAM-identification
Scripts and tools used for in silico CRISPR-Cas9 PAM identification.
nkran/hybrids
nkran/mafTools
Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
nkran/malariagen-data-python
A Python package providing convenience functions for accessing MalariaGEN data.
nkran/module-pathways
nkran/module-theoretical-yield
nkran/notebooks
Notebooks
nkran/pipes
Pipes
nkran/resolwe-bio
Bioinformatics pipelines for Resolwe
nkran/resolwe-bio-py
Resolwe Bioinformatics Python API
nkran/rnaseq_tutorial
nkran/rnaseq_variant_calling
nkran/taco
Multi-sample transcriptome assembly from RNA-Seq